Factsheet for Solyc03g082940.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
endoplasmic reticulum 2
nucleus 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 20363867
plastid: 22908117
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047662	Potato	cytosol	90.88	99.54
Solyc06g052030.2.1	Tomato	plastid	73.9	90.04
CDY35657	Canola	cytosol	79.45	87.33
CDY14379	Canola	cytosol	79.35	87.21
Bra003054.1-P	Field mustard	cytosol	79.25	87.1
VIT_16s0098g01630.t01	Wine grape	plastid	86.69	87.05
GSMUA_Achr1P28070_001	Banana	cytosol	76.0	86.31
AT5G53480.1	Thale cress	cytosol	78.2	85.75
GSMUA_Achr3P25220_001	Banana	cytosol	71.8	85.52
Os12t0568800-01	Rice	plasma membrane	61.53	83.5
KRH53541	Soybean	cytosol	76.21	83.47
TraesCS5A01G077200.1	Wheat	golgi	76.0	83.14
TraesCS5D01G094600.1	Wheat	cytosol	76.0	83.14
HORVU5Hr1G021580.1	Barley	cytosol	75.68	82.8
TraesCS5A01G082600.1	Wheat	golgi	75.68	82.8
TraesCS5B01G088700.1	Wheat	cytosol	75.68	82.8
TraesCS5D01G095100.1	Wheat	golgi	75.68	82.8
EES16185	Sorghum	cytosol	75.58	82.68
TraesCS5B01G088400.1	Wheat	cytosol	75.47	82.57
HORVU5Hr1G021530.2	Barley	cytosol	75.37	81.8
KRH64395	Soybean	peroxisome	66.04	81.08
GSMUA_Achr5P09570_001	Banana	cytosol	19.71	77.69
Zm00001d041556_P002	Maize	cytosol	75.58	73.05
GSMUA_Achr5P09580_001	Banana	cytosol	26.83	68.45
Zm00001d030694_P002	Maize	mitochondrion	74.32	66.01
Solyc09g005010.2.1	Tomato	endoplasmic reticulum	59.22	56.44
Solyc01g111780.2.1	Tomato	nucleus, plastid	18.13	19.44

Protein Annotations

Gene3D:1.25.10.10	MapMan:23.5.1.2.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0000060	GO:GO:0003674
GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005635	GO:GO:0005737	GO:GO:0006607	GO:GO:0006610	GO:GO:0006810
GO:GO:0006886	GO:GO:0006913	GO:GO:0008139	GO:GO:0008150	GO:GO:0008536	GO:GO:0008565
GO:GO:0016020	GO:GO:0016021	GO:GO:0031965	GO:GO:0034399	InterPro:IPR001494	InterPro:IPR011989
InterPro:Importin-beta_N	UniProt:K4BI70	InterPro:KPNB1_plant	PFAM:PF03810	PFAM:PF13513	PFscan:PS50166
PANTHER:PTHR10527	PANTHER:PTHR10527:SF44	SMART:SM00913	SUPFAM:SSF48371	EnsemblPlantsGene:Solyc03g082940.2	EnsemblPlants:Solyc03g082940.2.1
TMHMM:TMhelix	UniParc:UPI0002768767	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:+:52805230..52809686

Molecular Weight (calculated)

105567.0 Da

IEP (calculated)

4.428

GRAVY (calculated)

0.021

Length

954 amino acids

Sequence
(BLAST)

001: MGSTEEISLI SSRLASRGYS RSQTQSNRTF TSAFSSSSLS NSPLSLFLSL HFLPFCFFFF LSLLGFQGAP LLLCSIFTSF RYNMAMEVTQ ILLNAQSVDS
101: TVRKHSEETL KQFQEQNLPG FLLSLSGELA NEEKPVDSRK LAGLILKNAL DAKEQHRKFE LVQRWLSLDM AVKAQIKTCL LQTLSSPVPD AHSTASQVIA
201: KVAGIELPQK QWPELIGSLL SNIHQVPAHV KQATLETLGY LCEEVSPEVV DQDQVNKILT AVVQGMNAEE GNNDVRLAAT RALYNALSFA QANFNNDMER
301: DFIMRVVCEA TQSPEVKIRQ AAFECLVSIS STYYEKLAPY IQDIFNITAK AVKEDVEPVA LQAIEFWSSI CDEEIDILED FGGDFTADSD VPCYYFIKQA
401: LPALVPMLLE TLLKQEEDQD QDEGAWNLAM AGGTCLGLVA RTVGDEIVPL VMPFIQENIS KPDWRQREAA TYAFGSILEG PSPDKLTPLV NVALNFMLTA
501: LTKDPNSHVK DTTAWTLGRI FEFLHGSTVE TPIITPANCQ LIITVLLQAM KDAPNVAEKS CGALYFLAQG YEDMGASSPL TPFFQEIVQA LLTVTHREDA
601: GESRLRTAAY EALNEVVRCS TDETAPMVLQ LAPIIMTELH QTLEGQKLSS DEREKQSELQ GLLCGCLQVI IQKLGASEPT KFVFMQYADQ IMNLFLRVFA
701: CRNATVHEEA MLAIGALAYA TGPDFAKYMP EFYKYLEMGL QNFEEYQVCA VTVGVVGDVC RALEDKILPY CDGIMTQLLK DLSSNQLHRS VKPPIFSCLG
801: DIALAIGENF EKYLMYAMPM LQSAAELSAH TSGADDEMVE YTNLLRNGIL EAYSGIFQGF KNSPKTQLLI PYAPHILQFL DSIYMEKDMD DVVMKTAIGV
901: LGDLADTLGS NAGSLIQQSL SSKEFLNECL SSDDHLIKES AEWAKLAITR AISV

Best Arabidopsis Sequence Match ( AT5G53480.1 )
(BLAST)

001: MAMEVTQLLI NAQSIDGTVR KHAEESLKQF QEQNLAGFLL SLAGELANDE KPVDSRKLAG LVLKNALDAK EQHRKYELVQ RWLALDMSTK SQIRAFLLKT
101: LSAPVPDVRS TASQVIAKVA GIELPQKQWP ELIVSLLSNI HQLPAHVKQA TLETLGYLCE EVSPDVVEQE HVNKILTAVV QGMNAAEGNT DVRLAATRAL
201: YMALGFAQAN FNNDMERDYI MRVVCEATLS PEVKIRQAAF ECLVSIASTY YEKLAHYMQD IFNITAKAVR EDDESVALQA IEFWSSICDE EIDILEEYGG
301: EFAGDSDVPC FYFTKQALPG LVPLLLETLL KQEEDQDLDE GAWNIAMAGG TCLGLVARAV GDDIVPHVMP FIEEKISKPD WREREAATYA FGSILEGPSA
401: DKLMAIVNAA LTFMLNALTN DPSNHVKDTT AWTLGRIFEF LHGSTIETPI INQANCQQII TVLIQSMNDA PNVAEKACGA LYFLAQGYED IGPSSPLTPF
501: FQEIIKSLLA VAHREDATES RLRTAAYEAL NEVVRCSTDE TSTMVLQLVP VIMMELHNTL EGEKLSLDER EKQNELQGLL CGCLQVIIQK LGSEPTKSKF
601: MEYADQMMGL FLRVFGCRSA TAHEEAMLAI GALAYAAGPN FAKYMPEFYK YLEMGLQNFE EYQVCAVTVG VVGDVCRALE DKILPYCDGI MTQLLKDLSS
701: NQLHRSVKPP IFSCFGDIAL AIGEDFDKYW RYSMPMLQSA AELSAHSAGA DDEMTEYTNS LRNGILEAYS GIFQGFKNSA KTQLLIPFAP HILQFLDSIY
801: MEKDMDEVVM KTAIGVLGDL ADTLGSHVGG LIQQSVSSKE FLNECLSSED HTIKEAAEWA KHAITRAISV

Arabidopsis Description

KPNB1Importin subunit beta-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJD4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.