Factsheet for Solyc01g111780.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g109660.2.1
Solyc03g005680.2.1
Solyc07g065490.2.1
Solyc08g005420.2.1
Solyc09g090520.2.1
Solyc10g006000.2.1
Solyc10g051380.1.1
Solyc10g051390.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16950.1	Solyc01g109660.2.1	AT2G21660.1	14756317
AT2G16950.1	Solyc10g051380.1.1	AT2G21660.1	14756317
AT2G16950.1	Solyc10g051390.1.1	AT2G21660.1	14756317
AT2G16950.1	Solyc03g005680.2.1	AT4G14300.1	14756317
AT2G16950.1	Solyc09g090520.2.1	AT4G14300.1	14756317
AT2G16950.1	Solyc07g065490.2.1	AT4G26630.1	25387881
AT2G16950.1	Solyc10g006000.2.1	AT4G26630.1	25387881
AT2G16950.1	Solyc08g005420.2.1	AT5G27080.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36099	Soybean	cytosol	81.91	81.63
KRG90653	Soybean	cytosol	82.13	81.58
VIT_03s0038g02830.t01	Wine grape	cytosol	81.01	80.47
CDY47482	Canola	cytosol	73.71	74.29
Bra002011.1-P	Field mustard	cytosol	73.48	74.23
CDY31391	Canola	cytosol	73.26	73.92
Bra013038.1-P	Field mustard	cytosol	73.15	73.89
CDY02225	Canola	cytosol	73.15	73.81
CDY26790	Canola	cytosol	9.78	73.73
EES11709	Sorghum	cytosol	73.6	73.68
AT2G16950.1	Thale cress	cytosol	74.04	73.63
HORVU2Hr1G126610.7	Barley	cytosol	72.92	73.42
Bra037286.1-P	Field mustard	cytosol	73.82	73.41
Zm00001d002936_P010	Maize	cytosol	73.15	73.06
GSMUA_Achr4P16360_001	Banana	cytosol	43.26	73.06
TraesCS2D01G572700.1	Wheat	cytosol	73.26	72.69
TraesCS2A01G562500.1	Wheat	golgi	73.15	72.58
TraesCS2B01G624100.1	Wheat	cytosol	73.15	72.58
CDX89768	Canola	cytosol	71.24	72.46
Os04t0691500-01	Rice	cytosol, plasma membrane	62.36	72.27
Zm00001d026696_P005	Maize	cytosol	71.8	71.8
CDY71774	Canola	cytosol	21.69	68.2
CDY26791	Canola	cytosol	9.66	67.19
CDY54431	Canola	cytosol	73.82	54.98
AT2G16953.1	Thale cress	cytosol	3.82	53.12
AT2G16960.1	Thale cress	cytosol	32.47	52.36
Bra010184.1-P	Field mustard	cytosol, mitochondrion	16.85	49.18
TraesCS2B01G426000.1	Wheat	cytosol	16.07	39.29
TraesCS3A01G329100.1	Wheat	cytosol, mitochondrion	37.87	34.35
Solyc06g052030.2.1	Tomato	plastid	17.08	19.41
Solyc03g082940.2.1	Tomato	plastid	19.44	18.13
Solyc09g005010.2.1	Tomato	endoplasmic reticulum	18.43	16.38
Os04t0691600-02	Rice	plastid	0.9	5.52

Protein Annotations

Gene3D:1.25.10.10	MapMan:23.5.1.2.2	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0000060	GO:GO:0003674
GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005635	GO:GO:0005737	GO:GO:0006607	GO:GO:0006610	GO:GO:0006810
GO:GO:0006886	GO:GO:0008139	GO:GO:0008150	GO:GO:0008536	GO:GO:0008565	GO:GO:0016020
GO:GO:0031965	GO:GO:0034399	InterPro:HEAT	InterPro:IPR001494	InterPro:IPR011989	InterPro:Importin-beta_N
UniProt:K4B440	PFAM:PF02985	PFAM:PF03810	PFAM:PF13513	PFscan:PS50166	PANTHER:PTHR10527
PANTHER:PTHR10527:SF3	SMART:SM00913	SUPFAM:SSF48371	EnsemblPlantsGene:Solyc01g111780.2	EnsemblPlants:Solyc01g111780.2.1	UniParc:UPI00027678E9
SEG:seg	:	:	:	:	:

Description

Transportin-1 [Source:Projected from Arabidopsis thaliana (AT2G16950) UniProtKB/Swiss-Prot;Acc:Q8H0U4]

Coordinates

chr1:+:97953000..97970848

Molecular Weight (calculated)

99244.9 Da

IEP (calculated)

4.558

GRAVY (calculated)

0.044

Length

890 amino acids

Sequence
(BLAST)

001: MAASGTWQPQ EQGFKEICGL LEQQMSPTSD NCQIWQQLQH YSQFPDFNNY LAFIFAHAEG KSVDIRQAAG LLLKNNLRSA FQNMPLANQQ YIKSELLPSL
101: GAADRHIRST AGTIISVLVQ IDGVAGWPEL LQALVSSLDS SDVNHVEGAM DALSKICEDV PQLLDSDISG LSERPITVFL PRFLLLFQSP HASLRKLSLS
201: SVNQYIMLMP KILHLSMDKY LQGLFLLAND PAPEVRKLVC AAFVQLIEVR PAVLEPHLRN VLEYILQVNK DPDEEVALEA CEFWSAYCDA QLPPENLREF
301: LPRLIPVLLS NMVYADDDES LLEAEEDGSL PDRDQDIKPR FHSSRFHGSE DGEDDDEDIV NVWNLRKCSA AALDILSNVF GDDILPTLMP VVQAKLSCSN
401: DEVWKEREAA VLVLGAIAEG CINGLFPHLS EIISFLIPLL DDKFPLIRSI SCWTLSRFSK YIVQGTDHQE GREQFNKILM GLLRRVLDDN KRVQEAACSA
501: FATLEEEAAE ELAPCLEIIL QHLMCAFGKY QRRNLRIVYD AIGTLADAVG GELNQPKYLE ILMPPLIGKW EQLPNSDKDL FPLLECFTSI AQALGTGFAQ
601: FAQPVFQRCI TIIQSQLMAK VDPVKAGLQY DREFIVCCLD LLSGLAEGLG SGVESLVSQS NLRDLLLQCC LDDAPDVRQS AFALLGDLAR VCPVHLRPRL
701: VEFLDAATKQ LQNTSKLKET ISVANNACWA IGELAIKVQK EISPVVLTVV SCLVPILQHA EGLNKSLIEN SAITLGRLAW VCPELVSPHM EHFLQTWCFA
801: LSMIRDDIEK EDAFRGLCAM VKANPSGALN SLVFMCKAIA SWHEIRSEDL RNEICLVLQG YKQMLKDGAW EQFMSALEPS VKDKLSMYQV

Best Arabidopsis Sequence Match ( AT2G16950.2 )
(BLAST)

001: MAATAVVWQP RDDGLAEICS LLEQQISPSS VVDKSQIWKQ LQHFSQFPDF NNYLVFILVR AEGKSVEVRQ AAGLLLKNNL RGAYPSMTQE NQKYIKSELL
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAALYNSL DKYLQGLFVL ANDPVPEVRK LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNRDPDEEVS LEACEFWSAY CDAQLPPENL
301: KEFLPRLIPV LLENMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQKNLS
401: ASGDEAWKQR EAAVLALGAI AEGCMNGLYP HLSEIVAFLL PLLDDKFPLI RSISCWTLSR FGKYLIQESG NPKGYEQFEK VLMGLLRRLL DTNKRVQEAA
501: CSAFATVEED AAEELVPHLG VILQHLMCAF GKYQRRNLRI VYDAIGTLAD SVREELNKPA YLEILMPPLV AKWQQLSNSD KDLFPLLECF TSISQALGVG
601: FAPFAQPVFQ RCMDIIQLQQ LAKVNPASAG AQYDREFIVC SLDLLSGLAE GLGSGIESLV QQSNLRDLLL NCCIDEAADV RQSAFALMGD LARVFPVYLQ
701: PRLLDFLEIA SQQLSANLNR ENLSVANNAC WAIGELAVKV RQEVSPIVAK VVSSLGLILQ HGEGVNKALV ENSAITLGRL AWIRPDLVAP HMDHFMKPWC
801: MALSMVRDDI EKEDAFRGLC AVVKVNPSGG VSSLVFICQA IASWHEIRSE DVQTEVSQVL NGYKHMLGNS WAECLSALDP PVKERLARYQ V

Arabidopsis Description

TRN1transportin 1 [Source:TAIR;Acc:AT2G16950]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.