CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002011.1-P	Field mustard	cytosol	99.55	99.66
CDY02225	Canola	cytosol	93.88	93.88
CDY47482	Canola	cytosol	93.65	93.54
CDY26791	Canola	cytosol	13.38	92.19
CDX89768	Canola	cytosol	91.04	91.77
CDY71774	Canola	cytosol	28.68	89.4
CDY26790	Canola	cytosol	11.45	85.59
KRH36099	Soybean	cytosol	75.62	74.69
KRG90653	Soybean	cytosol	75.4	74.22
VIT_03s0038g02830.t01	Wine grape	cytosol	75.28	74.11
Solyc01g111780.2.1	Tomato	nucleus, plastid	73.92	73.26
CDY54431	Canola	cytosol	98.98	73.05
Zm00001d002936_P010	Maize	cytosol	69.39	68.69
HORVU2Hr1G126610.7	Barley	cytosol	68.82	68.67
EES11709	Sorghum	cytosol	69.16	68.62
Os04t0691500-01	Rice	cytosol, plasma membrane	59.64	68.49
TraesCS2A01G562500.1	Wheat	golgi	69.16	68.0
TraesCS2B01G624100.1	Wheat	cytosol	69.16	68.0
TraesCS2D01G572700.1	Wheat	cytosol	69.16	68.0
Zm00001d026696_P005	Maize	cytosol	68.03	67.42
GSMUA_Achr4P16360_001	Banana	cytosol	40.14	67.17
AT2G16960.1	Thale cress	cytosol	38.21	61.05
TraesCS2B01G426000.1	Wheat	cytosol	15.76	38.19
TraesCS3A01G329100.1	Wheat	cytosol, mitochondrion	35.15	31.6
CDY35657	Canola	cytosol	19.05	19.35
CDY14379	Canola	cytosol	19.05	19.35
CDY53085	Canola	cytosol	18.71	18.9
CDY44668	Canola	cytosol	18.71	18.9
CDY28068	Canola	cytosol	8.5	15.5
CDX99262	Canola	cytosol	7.82	15.07
Os04t0691600-02	Rice	plastid	1.13	6.9

Protein Annotations

Gene3D:1.25.10.10	MapMan:23.5.1.2.2	GO:A0A078H0T3	UniProt:A0A078H0T3	InterPro:ARM-like	InterPro:ARM-type_fold
EnsemblPlants:CDY31391	ProteinID:CDY31391	ProteinID:CDY31391.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0008536	EnsemblPlantsGene:GSBRNA2T00047599001	InterPro:HEAT	InterPro:IPR001494	InterPro:IPR011989
InterPro:Importin-beta_N	PFAM:PF02985	PFAM:PF03810	PFscan:PS50166	PANTHER:PTHR10527	PANTHER:PTHR10527:SF3
SMART:SM00913	SUPFAM:SSF48371	UniParc:UPI0004EE8CB9	SEG:seg	:	:

Description

BnaA07g03260DBnaA07g03260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H0T3]

Coordinates

chrLK032271:-:224280..230777

Molecular Weight (calculated)

98209.3 Da

IEP (calculated)

4.526

GRAVY (calculated)

0.026

Length

882 amino acids

Sequence
(BLAST)

001: MAATTVWQPR DDGLAEIFTL LEQQISPSSA VDKSQIWKQL EHFSQFPDFN NYLVFILVRA EGKPIGIRQA AGLLLKNNLK RVWISMAQEN QKYIKSELLP
101: CLGAVDRHIR TTVGTIISEV VNIEGVSGWL ELLPALVSCL DSNDLNHMDG AMDALSKICE DIPQVLDSEV PGLAERPINI FLPRLYQQFF QSPHASLRKL
201: ALGCVNQYVI IMPAALYNSM DKYLQGLFVL ANDPVAEVRK LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNKDPDEEVA LEACEFWSAY CDAQLPTENL
301: KEFLPRLIPV LLSNMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQAKLS
401: ASGDEAWKER EAAVLTLGAI AEGCFNGLYP LLSEANDKFP LIRSISCWTL SRFGKYLIQE IGNPKGYEQF EKVLMGLLRR LLDSNKRVQE AACSAFATVE
501: EDVAEELVPH LGVILQHLMC AFGKYQRRNL RIVYDAIGTL ADSVREELNK PAYLEILMPP LVAKWQQLSN SDKDLFPLLE CFTSISQALG VGFAPFAQPV
601: FQRCMDIIQL QLLAKVDPAS AGAQYDREFI VCSLDLLSGL AEGLGSGIES LISPSNLRDL LLKCCMDEAS DVRQSAFALM GDLARVYPAY LQPRMVEFLE
701: IASQQLSANL IRENLSVANN ACWAIGELAV KVRQEVSPIV TNVASSLGLI LQHGEAVNKS LVENSAITLG RLAWIRPDLV APHMEHFMKP WCLALSMVRD
801: DIEKEDAFRG LCAVVKVNPS GGVSSLVFIC KAIASWHEIR SEDVNNEVSQ VLNGYKQLLG NSWAECLSAL EPPVKERLAR YV

Best Arabidopsis Sequence Match ( AT2G16950.2 )
(BLAST)

001: MAATAVVWQP RDDGLAEICS LLEQQISPSS VVDKSQIWKQ LQHFSQFPDF NNYLVFILVR AEGKSVEVRQ AAGLLLKNNL RGAYPSMTQE NQKYIKSELL
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAALYNSL DKYLQGLFVL ANDPVPEVRK LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNRDPDEEVS LEACEFWSAY CDAQLPPENL
301: KEFLPRLIPV LLENMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQKNLS
401: ASGDEAWKQR EAAVLALGAI AEGCMNGLYP HLSEIVAFLL PLLDDKFPLI RSISCWTLSR FGKYLIQESG NPKGYEQFEK VLMGLLRRLL DTNKRVQEAA
501: CSAFATVEED AAEELVPHLG VILQHLMCAF GKYQRRNLRI VYDAIGTLAD SVREELNKPA YLEILMPPLV AKWQQLSNSD KDLFPLLECF TSISQALGVG
601: FAPFAQPVFQ RCMDIIQLQQ LAKVNPASAG AQYDREFIVC SLDLLSGLAE GLGSGIESLV QQSNLRDLLL NCCIDEAADV RQSAFALMGD LARVFPVYLQ
701: PRLLDFLEIA SQQLSANLNR ENLSVANNAC WAIGELAVKV RQEVSPIVAK VVSSLGLILQ HGEGVNKALV ENSAITLGRL AWIRPDLVAP HMDHFMKPWC
801: MALSMVRDDI EKEDAFRGLC AVVKVNPSGG VSSLVFICQA IASWHEIRSE DVQTEVSQVL NGYKHMLGNS WAECLSALDP PVKERLARYQ V

Arabidopsis Description

TRN1transportin 1 [Source:TAIR;Acc:AT2G16950]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.