Factsheet for Bra002011.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31391	Canola	cytosol	99.66	99.55
Bra013038.1-P	Field mustard	cytosol	93.98	93.98
Bra037286.1-P	Field mustard	cytosol	92.17	90.73
KRH36099	Soybean	cytosol	75.94	74.92
KRG90653	Soybean	cytosol	75.71	74.44
VIT_03s0038g02830.t01	Wine grape	cytosol	75.6	74.33
Solyc01g111780.2.1	Tomato	nucleus, plastid	74.23	73.48
HORVU2Hr1G126610.7	Barley	cytosol	69.13	68.89
Zm00001d002936_P010	Maize	cytosol	69.58	68.8
EES11709	Sorghum	cytosol	69.35	68.73
Os04t0691500-01	Rice	cytosol, plasma membrane	59.59	68.36
TraesCS2D01G572700.1	Wheat	cytosol	69.47	68.23
TraesCS2B01G624100.1	Wheat	cytosol	69.47	68.23
TraesCS2A01G562500.1	Wheat	golgi	69.47	68.23
Zm00001d026696_P005	Maize	cytosol	68.33	67.64
GSMUA_Achr4P16360_001	Banana	cytosol	40.41	67.55
AT2G16960.1	Thale cress	cytosol	38.48	61.41
Bra010184.1-P	Field mustard	cytosol, mitochondrion	19.75	57.05
TraesCS2B01G426000.1	Wheat	cytosol	15.89	38.46
TraesCS3A01G329100.1	Wheat	cytosol, mitochondrion	35.41	31.8
Bra003054.1-P	Field mustard	cytosol	19.07	19.35
Bra029733.1-P	Field mustard	cytosol	18.73	18.92
Bra029635.1-P	Field mustard	cytosol	3.63	12.96
Os04t0691600-02	Rice	plastid	1.14	6.9

Protein Annotations

Gene3D:1.25.10.10	MapMan:23.5.1.2.2	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlantsGene:Bra002011	EnsemblPlants:Bra002011.1
EnsemblPlants:Bra002011.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008536
InterPro:HEAT	InterPro:IPR001494	InterPro:IPR011989	InterPro:Importin-beta_N	UniProt:M4CCT0	PFAM:PF02985
PFAM:PF03810	PFscan:PS50166	PANTHER:PTHR10527	PANTHER:PTHR10527:SF3	SMART:SM00913	SUPFAM:SSF48371
UniParc:UPI0002544100	SEG:seg	:	:	:	:

Description

AT2G16950 (E=0.0) TRN1, ATTRN1 | TRN1 (TRANSPORTIN 1); protein transporter

Coordinates

chrA10:-:12229344..12235257

Molecular Weight (calculated)

98121.2 Da

IEP (calculated)

4.512

GRAVY (calculated)

0.022

Length

881 amino acids

Sequence
(BLAST)

001: MAATTVWQPR DDGLAEIFPL LEQQISPSSA VDKSQIWKQL EHFSQFPDFN NYLVFILVRA EGKPIGIRQA AGLLLKNNLK RVWISMAQEN QKYIKSELLP
101: CLGAVDRHIR TTVGTIISEV VNIEGVSGWL ELLPALVSCL DSNDLNHMDG AMDALSKICE DIPQVLDSEV PGLAERPINI FLPRLYQFFQ SPHASLRKLA
201: LGCVNQYVII MPAALYNSMD KYLQGLFVLA NDPVAEVRKL VCAAFVHLTE VLPSSIEPHL RNVMEYMLQV NKDPDEEVAL EACEFWSAYC DAQLPTENLK
301: EFLPRLIPVL LSNMAYADDD ESLLDAEEDE SQPDRDQDLK PRFHTSRLHG SEDFDDDDDD SFNVWNLRKC SAAAIDVLSN VFGDEILPAL MPLIQAKLSA
401: SGDEAWKERE AAVLTLGAIA EGCFNGLYPL LSEANDKFPL IRSISCWTLS RFGKYLIQEI GNPKGYEQFE KVLMGLLRRL LDSNKRVQEA ACSAFATVEE
501: DAAEELVPHL EVILQHLMCA FGKYQRRNLR IVYDAIGTLA DSVREELNKP AYLEILMPPL VAKWQQLSNS DKDLFPLLEC FTSISQALGV GFAPFAQPVF
601: QRCMDIIQLQ LLAKVDPASA GAQYDREFIV CSLDLLSGLA EGLGSGIESL ISPSNLRDLL LKCCMDEASD VRQSAFALMG DLARVYPAYL QPRMVEFLEI
701: ASQQLSANLI RENLSVANNA CWAIGELAVK VRQEVSPIVT NVASSLGLIL QHGEAVNKSL VENSAITLGR LAWIRPDLVA PHMEHFMKPW CLALSMVRDD
801: IEKEDAFRGL CAVVKVNPSG GVSSLVFICK AIASWHEIRS EDVNNEVSQV LNGYKQLLGN SWAECLSALE PPVKERLARY V

Best Arabidopsis Sequence Match ( AT2G16950.2 )
(BLAST)

001: MAATAVVWQP RDDGLAEICS LLEQQISPSS VVDKSQIWKQ LQHFSQFPDF NNYLVFILVR AEGKSVEVRQ AAGLLLKNNL RGAYPSMTQE NQKYIKSELL
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAALYNSL DKYLQGLFVL ANDPVPEVRK LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNRDPDEEVS LEACEFWSAY CDAQLPPENL
301: KEFLPRLIPV LLENMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQKNLS
401: ASGDEAWKQR EAAVLALGAI AEGCMNGLYP HLSEIVAFLL PLLDDKFPLI RSISCWTLSR FGKYLIQESG NPKGYEQFEK VLMGLLRRLL DTNKRVQEAA
501: CSAFATVEED AAEELVPHLG VILQHLMCAF GKYQRRNLRI VYDAIGTLAD SVREELNKPA YLEILMPPLV AKWQQLSNSD KDLFPLLECF TSISQALGVG
601: FAPFAQPVFQ RCMDIIQLQQ LAKVNPASAG AQYDREFIVC SLDLLSGLAE GLGSGIESLV QQSNLRDLLL NCCIDEAADV RQSAFALMGD LARVFPVYLQ
701: PRLLDFLEIA SQQLSANLNR ENLSVANNAC WAIGELAVKV RQEVSPIVAK VVSSLGLILQ HGEGVNKALV ENSAITLGRL AWIRPDLVAP HMDHFMKPWC
801: MALSMVRDDI EKEDAFRGLC AVVKVNPSGG VSSLVFICQA IASWHEIRSE DVQTEVSQVL NGYKHMLGNS WAECLSALDP PVKERLARYQ V

Arabidopsis Description

TRN1transportin 1 [Source:TAIR;Acc:AT2G16950]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.