Factsheet for Bra013038.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02225	Canola	cytosol	99.43	99.32
Bra002011.1-P	Field mustard	cytosol	93.98	93.98
Bra037286.1-P	Field mustard	cytosol	91.49	90.06
VIT_03s0038g02830.t01	Wine grape	cytosol	75.82	74.55
KRH36099	Soybean	cytosol	75.37	74.36
KRG90653	Soybean	cytosol	75.37	74.11
Solyc01g111780.2.1	Tomato	nucleus, plastid	73.89	73.15
HORVU2Hr1G126610.7	Barley	cytosol	69.24	69.0
Os04t0691500-01	Rice	cytosol, plasma membrane	59.7	68.49
EES11709	Sorghum	cytosol	69.01	68.39
TraesCS2D01G572700.1	Wheat	cytosol	69.58	68.34
TraesCS2B01G624100.1	Wheat	cytosol	69.58	68.34
TraesCS2A01G562500.1	Wheat	golgi	69.58	68.34
Zm00001d002936_P010	Maize	cytosol	69.01	68.24
GSMUA_Achr4P16360_001	Banana	cytosol	40.41	67.55
Zm00001d026696_P005	Maize	cytosol	67.99	67.3
AT2G16960.1	Thale cress	cytosol	39.27	62.68
Bra010184.1-P	Field mustard	cytosol, mitochondrion	19.75	57.05
TraesCS2B01G426000.1	Wheat	cytosol	15.21	36.81
TraesCS3A01G329100.1	Wheat	cytosol, mitochondrion	35.75	32.11
Bra029733.1-P	Field mustard	cytosol	18.27	18.46
Bra003054.1-P	Field mustard	cytosol	18.16	18.43
Bra029635.1-P	Field mustard	cytosol	3.63	12.96
Os04t0691600-02	Rice	plastid	1.25	7.59

Protein Annotations

Gene3D:1.25.10.10	MapMan:23.5.1.2.2	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlantsGene:Bra013038	EnsemblPlants:Bra013038.1
EnsemblPlants:Bra013038.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008536
InterPro:HEAT	InterPro:IPR001494	InterPro:IPR011989	InterPro:Importin-beta_N	UniProt:M4D978	PFAM:PF02985
PFAM:PF03810	PFscan:PS50166	PANTHER:PTHR10527	PANTHER:PTHR10527:SF3	SMART:SM00913	SUPFAM:SSF48371
UniParc:UPI000254042A	SEG:seg	:	:	:	:

Description

AT2G16950 (E=0.0) TRN1, ATTRN1 | TRN1 (TRANSPORTIN 1); protein transporter

Coordinates

chrA03:+:20859331..20864753

Molecular Weight (calculated)

98204.1 Da

IEP (calculated)

4.603

GRAVY (calculated)

-0.019

Length

881 amino acids

Sequence
(BLAST)

001: MAVWQPREDG LSEICALLEQ QISPSSAAVD KSQIWKQLEH FSQIPDFNNY LVFILVRAQG KSVEIRQAAG LLLKNNLKGG YSSMAQENRK YIKSELLPCL
101: GAVDRHIRTT VGTIISEIVN IDGVSGWLEL LPALVTCLDS NDLNHMDGAM DALSKICEDI PHVLDSEVPG LAETTPINIF LPRLFQFFQS PHASLRKLSL
201: GCVNQYVIIM PAALYNSMDK YLQGLFVLAN DPVAEVRKLV CAAFVQLTEV LPSSIEPHLR NVMEYMLQVN KYPDEEVALE ACEFWSAYCD AQLPPDNLKE
301: LLPRLIPVLL SNMAYADDDE SLLDAEEDES QPDRDQDLKP RFHTSRLHGS EYFDDDDDDS FNVWNLRKCS AAAIDVLSNV FGDEILPALM PLIQAKISTS
401: GDETWKEREA AVLTLGAIAE GCFNGLYPHL SEANDKFPLI RSISCWTLSR FGKYLIQETG NPKGYEQFEK VLMGLLRRLL DSNKRVQEAA CSAFATVEED
501: AAEELVPHLG VILQHLMCAF GKYQRRNLRI VYDAIGTLAD SVREELNKPA YLEILMPPLV AKWQQLSNSD KDLFPLLECF TSISQALGVG FAPFAQPVFQ
601: RCMDIIQLQQ LAKVDPASAG AQYDREFIVC SLDLLSGLAE GLGSGIESLI SQSNLRDVLL KCCMDETSDV RQSAFALMGD LARVFPAYLQ PRLLEFLEIA
701: SQQLNANLSR ENLSVANNAC WAIGELAVKV RQEVSPIVTN VVSSLGLILQ HGEAVNKSLV ENSAITLGRL AWIRPDLVAP HMEHFMKPWC LALSMVRDDI
801: EKEEAFRGLC AVVKVNPSGG VSSLVFICKA IASWHEIRNE DVKNEVSQVL NGYKHMLGNS WAECWSALEP PVKERLSRYQ V

Best Arabidopsis Sequence Match ( AT2G16950.2 )
(BLAST)

001: MAATAVVWQP RDDGLAEICS LLEQQISPSS VVDKSQIWKQ LQHFSQFPDF NNYLVFILVR AEGKSVEVRQ AAGLLLKNNL RGAYPSMTQE NQKYIKSELL
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAALYNSL DKYLQGLFVL ANDPVPEVRK LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNRDPDEEVS LEACEFWSAY CDAQLPPENL
301: KEFLPRLIPV LLENMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQKNLS
401: ASGDEAWKQR EAAVLALGAI AEGCMNGLYP HLSEIVAFLL PLLDDKFPLI RSISCWTLSR FGKYLIQESG NPKGYEQFEK VLMGLLRRLL DTNKRVQEAA
501: CSAFATVEED AAEELVPHLG VILQHLMCAF GKYQRRNLRI VYDAIGTLAD SVREELNKPA YLEILMPPLV AKWQQLSNSD KDLFPLLECF TSISQALGVG
601: FAPFAQPVFQ RCMDIIQLQQ LAKVNPASAG AQYDREFIVC SLDLLSGLAE GLGSGIESLV QQSNLRDLLL NCCIDEAADV RQSAFALMGD LARVFPVYLQ
701: PRLLDFLEIA SQQLSANLNR ENLSVANNAC WAIGELAVKV RQEVSPIVAK VVSSLGLILQ HGEGVNKALV ENSAITLGRL AWIRPDLVAP HMDHFMKPWC
801: MALSMVRDDI EKEDAFRGLC AVVKVNPSGG VSSLVFICQA IASWHEIRSE DVQTEVSQVL NGYKHMLGNS WAECLSALDP PVKERLARYQ V

Arabidopsis Description

TRN1transportin 1 [Source:TAIR;Acc:AT2G16950]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.