Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G562500.1 | Wheat | golgi | 98.76 | 97.32 |
| TraesCS2D01G572700.1 | Wheat | cytosol | 98.53 | 97.1 |
| TraesCS2B01G624100.1 | Wheat | cytosol | 98.53 | 97.1 |
| EES11709 | Sorghum | cytosol | 89.82 | 89.31 |
| Zm00001d002936_P010 | Maize | cytosol | 89.25 | 88.55 |
| Os04t0691500-01 | Rice | cytosol, plasma membrane | 76.7 | 88.28 |
| Zm00001d026696_P005 | Maize | cytosol | 88.24 | 87.64 |
| GSMUA_Achr8P34170_001 | Banana | cytosol | 77.38 | 76.77 |
| VIT_03s0038g02830.t01 | Wine grape | cytosol | 75.34 | 74.33 |
| KRG90653 | Soybean | cytosol | 74.43 | 73.44 |
| KRH36099 | Soybean | cytosol | 74.09 | 73.35 |
| Solyc01g111780.2.1 | Tomato | nucleus, plastid | 73.42 | 72.92 |
| GSMUA_Achr4P16350_001 | Banana | cytosol | 25.0 | 71.29 |
| VIT_18s0001g00910.t01 | Wine grape | cytosol | 71.04 | 70.8 |
| AT2G16950.1 | Thale cress | cytosol | 70.48 | 69.61 |
| CDY02225 | Canola | cytosol | 69.23 | 69.39 |
| CDY47482 | Canola | cytosol | 69.23 | 69.31 |
| Bra013038.1-P | Field mustard | cytosol | 69.0 | 69.24 |
| Bra002011.1-P | Field mustard | cytosol | 68.89 | 69.13 |
| Bra037286.1-P | Field mustard | cytosol | 69.68 | 68.83 |
| CDY31391 | Canola | cytosol | 68.67 | 68.82 |
| CDY26790 | Canola | cytosol | 9.16 | 68.64 |
| CDX89768 | Canola | cytosol | 67.08 | 67.77 |
| CDY26791 | Canola | cytosol | 9.5 | 65.62 |
| CDY71774 | Canola | cytosol | 19.91 | 62.19 |
| AT2G16953.1 | Thale cress | cytosol | 3.85 | 53.12 |
| CDY54431 | Canola | cytosol | 69.46 | 51.38 |
| AT2G16960.1 | Thale cress | cytosol | 31.79 | 50.91 |
| Bra010184.1-P | Field mustard | cytosol, mitochondrion | 16.18 | 46.89 |
| HORVU5Hr1G021580.1 | Barley | cytosol | 18.78 | 19.04 |
| HORVU1Hr1G060180.2 | Barley | cytosol | 18.55 | 18.89 |
| HORVU5Hr1G021530.2 | Barley | cytosol | 18.67 | 18.77 |
| HORVU4Hr1G055910.2 | Barley | cytosol, plastid | 19.8 | 18.1 |
| HORVU1Hr1G013580.2 | Barley | cytosol, plastid | 18.67 | 17.12 |
| Os04t0691600-02 | Rice | plastid | 1.13 | 6.9 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:23.5.1.2.2 | UniProt:A0A287JU15 | InterPro:ARM-like | InterPro:ARM-type_fold | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0008536 | InterPro:HEAT | EnsemblPlantsGene:HORVU2Hr1G126610 |
| EnsemblPlants:HORVU2Hr1G126610.7 | InterPro:IPR001494 | InterPro:IPR011989 | InterPro:Importin-beta_N | PFAM:PF02985 | PFAM:PF03810 |
| PFAM:PF13513 | PFscan:PS50166 | PANTHER:PTHR10527 | PANTHER:PTHR10527:SF3 | SMART:SM00913 | SUPFAM:SSF48371 |
| UniParc:UPI000B489683 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:-:763960619..763972786
Molecular Weight (calculated)
97912.9 Da
IEP (calculated)
4.514
GRAVY (calculated)
0.059
Length
884 amino acids
Sequence
(BLAST)
(BLAST)
001: PQEEGLREIC AVLEAHISPN SDQARIWQQL QHYAQFPDFN NYLVFLLARG QGKSFEVRQA AGLLLKNNLR AAFVSMPPSS QQYIKSELLP CIGANNRAIR
101: STVGTVISVL FQIVGVAGWI ELFQALHQCL DSNDLDHMEG AMDAIYKICE DVPEELDVDV PGLSERPINV FMPRMLQFFQ SPHASLRKLS LGCINQYIVV
201: MPSALYMAMD QYLQGLFVLV KDPSADVRKL VCSAWVQLVE VRPSILEPHL KNVTELILQA NKDSDDEVAL EACEFWYASA YCDVSMPPEG LREFLPRLIP
301: TLVSNMVYTD DDESLADAEE DESFPDRDQD LKPRFHASRL HGSENGEDDD DDDAVNAWNL RKCSAAGLDV LSNVFGDDIL PTLMPLIQQN LARTDDESWK
401: EREAAVLSIG AIAEGCITGL YPHLPQMVAF LIPLLDDKFP LIRSITCWTL SRYSKFIVQS LGHPNGREQF DKILMGLLRR ILDTNKRVQE AACSAFATLE
501: EEAAEELVPR LEVILQHLMC AYGKYQRRNL RILYDALGTL ADAVGAELNQ AKYLDIFMPP LIAKWQQLPN SDKDLFPLLE CFTSIAQALG PGFSQFAEPV
601: FVRCISLIQT QQLAKVDPAA AGALYDKEFI VCALDLLSGL TEGLGSGIES LVAQSNLRDL LLQCCVDEAP DVRQSALALL GDFARVCPIH LHPRLQEFLT
701: AAAKQLTPQS VKDAVSVANN ACWAIGELAI KIGKEISPVV ISVVSCLVPI LTTPESLNKS LIENSAITLG RLSWVCPDIV APHMEHFMPA WCNALCMIRD
801: DFEKEDAFHG LCAMVAANPT GAVSSLVHVC QACASWNEIK SEGLHNEVSQ ILNGYKQMFG AAGWEQCMST LEPAVVQRLA RYGV
101: STVGTVISVL FQIVGVAGWI ELFQALHQCL DSNDLDHMEG AMDAIYKICE DVPEELDVDV PGLSERPINV FMPRMLQFFQ SPHASLRKLS LGCINQYIVV
201: MPSALYMAMD QYLQGLFVLV KDPSADVRKL VCSAWVQLVE VRPSILEPHL KNVTELILQA NKDSDDEVAL EACEFWYASA YCDVSMPPEG LREFLPRLIP
301: TLVSNMVYTD DDESLADAEE DESFPDRDQD LKPRFHASRL HGSENGEDDD DDDAVNAWNL RKCSAAGLDV LSNVFGDDIL PTLMPLIQQN LARTDDESWK
401: EREAAVLSIG AIAEGCITGL YPHLPQMVAF LIPLLDDKFP LIRSITCWTL SRYSKFIVQS LGHPNGREQF DKILMGLLRR ILDTNKRVQE AACSAFATLE
501: EEAAEELVPR LEVILQHLMC AYGKYQRRNL RILYDALGTL ADAVGAELNQ AKYLDIFMPP LIAKWQQLPN SDKDLFPLLE CFTSIAQALG PGFSQFAEPV
601: FVRCISLIQT QQLAKVDPAA AGALYDKEFI VCALDLLSGL TEGLGSGIES LVAQSNLRDL LLQCCVDEAP DVRQSALALL GDFARVCPIH LHPRLQEFLT
701: AAAKQLTPQS VKDAVSVANN ACWAIGELAI KIGKEISPVV ISVVSCLVPI LTTPESLNKS LIENSAITLG RLSWVCPDIV APHMEHFMPA WCNALCMIRD
801: DFEKEDAFHG LCAMVAANPT GAVSSLVHVC QACASWNEIK SEGLHNEVSQ ILNGYKQMFG AAGWEQCMST LEPAVVQRLA RYGV
001: MAATAVVWQP RDDGLAEICS LLEQQISPSS VVDKSQIWKQ LQHFSQFPDF NNYLVFILVR AEGKSVEVRQ AAGLLLKNNL RGAYPSMTQE NQKYIKSELL
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAALYNSL DKYLQGLFVL ANDPVPEVRK LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNRDPDEEVS LEACEFWSAY CDAQLPPENL
301: KEFLPRLIPV LLENMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQKNLS
401: ASGDEAWKQR EAAVLALGAI AEGCMNGLYP HLSEIVAFLL PLLDDKFPLI RSISCWTLSR FGKYLIQESG NPKGYEQFEK VLMGLLRRLL DTNKRVQEAA
501: CSAFATVEED AAEELVPHLG VILQHLMCAF GKYQRRNLRI VYDAIGTLAD SVREELNKPA YLEILMPPLV AKWQQLSNSD KDLFPLLECF TSISQALGVG
601: FAPFAQPVFQ RCMDIIQLQQ LAKVNPASAG AQYDREFIVC SLDLLSGLAE GLGSGIESLV QQSNLRDLLL NCCIDEAADV RQSAFALMGD LARVFPVYLQ
701: PRLLDFLEIA SQQLSANLNR ENLSVANNAC WAIGELAVKV RQEVSPIVAK VVSSLGLILQ HGEGVNKALV ENSAITLGRL AWIRPDLVAP HMDHFMKPWC
801: MALSMVRDDI EKEDAFRGLC AVVKVNPSGG VSSLVFICQA IASWHEIRSE DVQTEVSQVL NGYKHMLGNS WAECLSALDP PVKERLARYQ V
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAALYNSL DKYLQGLFVL ANDPVPEVRK LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNRDPDEEVS LEACEFWSAY CDAQLPPENL
301: KEFLPRLIPV LLENMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQKNLS
401: ASGDEAWKQR EAAVLALGAI AEGCMNGLYP HLSEIVAFLL PLLDDKFPLI RSISCWTLSR FGKYLIQESG NPKGYEQFEK VLMGLLRRLL DTNKRVQEAA
501: CSAFATVEED AAEELVPHLG VILQHLMCAF GKYQRRNLRI VYDAIGTLAD SVREELNKPA YLEILMPPLV AKWQQLSNSD KDLFPLLECF TSISQALGVG
601: FAPFAQPVFQ RCMDIIQLQQ LAKVNPASAG AQYDREFIVC SLDLLSGLAE GLGSGIESLV QQSNLRDLLL NCCIDEAADV RQSAFALMGD LARVFPVYLQ
701: PRLLDFLEIA SQQLSANLNR ENLSVANNAC WAIGELAVKV RQEVSPIVAK VVSSLGLILQ HGEGVNKALV ENSAITLGRL AWIRPDLVAP HMDHFMKPWC
801: MALSMVRDDI EKEDAFRGLC AVVKVNPSGG VSSLVFICQA IASWHEIRSE DVQTEVSQVL NGYKHMLGNS WAECLSALDP PVKERLARYQ V
Arabidopsis Description
TRN1transportin 1 [Source:TAIR;Acc:AT2G16950]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.