Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P16350_001 | Banana | cytosol | 30.3 | 87.1 |
| GSMUA_Achr4P16360_001 | Banana | cytosol | 49.94 | 84.44 |
| Os04t0691500-01 | Rice | cytosol, plasma membrane | 67.45 | 78.26 |
| HORVU2Hr1G126610.7 | Barley | cytosol | 76.77 | 77.38 |
| EES11709 | Sorghum | cytosol | 77.1 | 77.28 |
| TraesCS2D01G572700.1 | Wheat | cytosol | 77.78 | 77.26 |
| Zm00001d002936_P010 | Maize | cytosol | 77.22 | 77.22 |
| TraesCS2B01G624100.1 | Wheat | cytosol | 77.67 | 77.15 |
| TraesCS2A01G562500.1 | Wheat | golgi | 77.67 | 77.15 |
| Zm00001d026696_P005 | Maize | cytosol | 76.32 | 76.4 |
| TraesCS2B01G426000.1 | Wheat | cytosol | 17.17 | 42.03 |
| TraesCS3A01G329100.1 | Wheat | cytosol, mitochondrion | 38.27 | 34.76 |
| GSMUA_Achr1P28070_001 | Banana | cytosol | 19.3 | 20.48 |
| GSMUA_Achr5P28110_001 | Banana | cytosol | 18.63 | 19.74 |
| GSMUA_Achr10P... | Banana | cytosol | 18.52 | 19.62 |
| GSMUA_Achr3P25220_001 | Banana | cytosol | 17.28 | 19.23 |
| GSMUA_Achr8P01910_001 | Banana | cytosol | 17.17 | 19.05 |
| GSMUA_Achr5P09570_001 | Banana | cytosol | 4.94 | 18.18 |
| GSMUA_Achr5P09580_001 | Banana | cytosol | 6.17 | 14.71 |
| Os04t0691600-02 | Rice | plastid | 1.23 | 7.59 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:23.5.1.2.2 | InterPro:ARM-like | InterPro:ARM-type_fold | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0008150 | GO:GO:0008536 | EnsemblPlantsGene:GSMUA_Achr8G34170_001 | EnsemblPlants:GSMUA_Achr8P34170_001 | EnsemblPlants:GSMUA_Achr8T34170_001 |
| InterPro:IPR001494 | InterPro:IPR011989 | InterPro:Importin-beta_N | UniProt:M0TW19 | PFAM:PF03810 | PFAM:PF13513 |
| PFscan:PS50166 | PANTHER:PTHR10527 | PANTHER:PTHR10527:SF3 | SMART:SM00913 | SUPFAM:SSF48371 | UniParc:UPI000295D809 |
| SEG:seg | : | : | : | : | : |
Description
Putative Transportin-1 [Source:GMGC_GENE;Acc:GSMUA_Achr8G34170_001]
Coordinates
chr8:-:35003881..35045853
Molecular Weight (calculated)
99360.8 Da
IEP (calculated)
4.774
GRAVY (calculated)
0.059
Length
891 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAEATALWQ PREEGLREIC GLLEQHISPN SDQSRIWQQL QHYNQLPDFN NYLVFILAHA EGKSLEVRQA AGLLLKNNLR ATFSSLSSSY RQYIKSELLP
101: CLGASDRTIR STVGTIISVL VQLDRVAGWP ELLQVLARCL ASNDFNHMEG AMDAIYKICE DVPEELDVDV PGLSERPINI FMPRLLQFFQ SPHAILRKLS
201: LGSINQFIVV MPAALFMSMD QYLQGLFHLA KDPSAEVRKL VCSAFVQLIE VRPSFLEPHL RNVIEYLLQA NKDPDDEVSL EACEFWSAYC DGTLPPDSLR
301: EYLPRLIPVL MLNMAYADDD ETLFDAEEDE SFPDRDQDLK PRFHSSRFHG SDNMEDVSSQ AFNTWNLRKC SAAGLDILSN VFGDEILPTL MPLIQQKLSA
401: TSDSNWKERE AAVLAIGAIA EGCINGLYPH LPEIIAFLIP LLDDKFPLIR SITCWTLSRF SKFIVQSIGH KDGYEQFDKV LTGLLRRILD TNKRVQEAAC
501: SAFATLEEEA ADELAPRLEI ILHHLLCAYG KYQRRNLRIL YDAIGTLADA VGSELNQPKY LDILMPPLIT KWQQLSNSDK DLFPLLECFT SISQALGPGF
601: SQFAEPVYQR CIGLIQIQLL AKVDHVTAGV QYDKEFIVCS LDLLSGLAEG LGGGIESLVA KSNLRDLLLQ CCMDQIADIR QSAFALLGDL ARVCPAHLHP
701: RLADFLSVAA EQLSAAAVKE AVSVANNACW AIGELAVQVH QEIAPVVLAV ISCLVPILQN AEGLNKSLLE NSAITLGRLA WVCPELMAPH VEHFIQSWCT
801: TLCIIRDDYE KEDAFRGLCA IVRVNPSGVV SSLAYLCKAV ASWHEIRSQD LHNEICQVLN GYKQMLGDGA WKQCMSTLDP QAVQRLSRFG V
101: CLGASDRTIR STVGTIISVL VQLDRVAGWP ELLQVLARCL ASNDFNHMEG AMDAIYKICE DVPEELDVDV PGLSERPINI FMPRLLQFFQ SPHAILRKLS
201: LGSINQFIVV MPAALFMSMD QYLQGLFHLA KDPSAEVRKL VCSAFVQLIE VRPSFLEPHL RNVIEYLLQA NKDPDDEVSL EACEFWSAYC DGTLPPDSLR
301: EYLPRLIPVL MLNMAYADDD ETLFDAEEDE SFPDRDQDLK PRFHSSRFHG SDNMEDVSSQ AFNTWNLRKC SAAGLDILSN VFGDEILPTL MPLIQQKLSA
401: TSDSNWKERE AAVLAIGAIA EGCINGLYPH LPEIIAFLIP LLDDKFPLIR SITCWTLSRF SKFIVQSIGH KDGYEQFDKV LTGLLRRILD TNKRVQEAAC
501: SAFATLEEEA ADELAPRLEI ILHHLLCAYG KYQRRNLRIL YDAIGTLADA VGSELNQPKY LDILMPPLIT KWQQLSNSDK DLFPLLECFT SISQALGPGF
601: SQFAEPVYQR CIGLIQIQLL AKVDHVTAGV QYDKEFIVCS LDLLSGLAEG LGGGIESLVA KSNLRDLLLQ CCMDQIADIR QSAFALLGDL ARVCPAHLHP
701: RLADFLSVAA EQLSAAAVKE AVSVANNACW AIGELAVQVH QEIAPVVLAV ISCLVPILQN AEGLNKSLLE NSAITLGRLA WVCPELMAPH VEHFIQSWCT
801: TLCIIRDDYE KEDAFRGLCA IVRVNPSGVV SSLAYLCKAV ASWHEIRSQD LHNEICQVLN GYKQMLGDGA WKQCMSTLDP QAVQRLSRFG V
001: MAATAVVWQP RDDGLAEICS LLEQQISPSS VVDKSQIWKQ LQHFSQFPDF NNYLVFILVR AEGKSVEVRQ AAGLLLKNNL RGAYPSMTQE NQKYIKSELL
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAALYNSL DKYLQGLFVL ANDPVPEVRK LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNRDPDEEVS LEACEFWSAY CDAQLPPENL
301: KEFLPRLIPV LLENMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQKNLS
401: ASGDEAWKQR EAAVLALGAI AEGCMNGLYP HLSEIVAFLL PLLDDKFPLI RSISCWTLSR FGKYLIQESG NPKGYEQFEK VLMGLLRRLL DTNKRVQEAA
501: CSAFATVEED AAEELVPHLG VILQHLMCAF GKYQRRNLRI VYDAIGTLAD SVREELNKPA YLEILMPPLV AKWQQLSNSD KDLFPLLECF TSISQALGVG
601: FAPFAQPVFQ RCMDIIQLQQ LAKVNPASAG AQYDREFIVC SLDLLSGLAE GLGSGIESLV QQSNLRDLLL NCCIDEAADV RQSAFALMGD LARVFPVYLQ
701: PRLLDFLEIA SQQLSANLNR ENLSVANNAC WAIGELAVKV RQEVSPIVAK VVSSLGLILQ HGEGVNKALV ENSAITLGRL AWIRPDLVAP HMDHFMKPWC
801: MALSMVRDDI EKEDAFRGLC AVVKVNPSGG VSSLVFICQA IASWHEIRSE DVQTEVSQVL NGYKHMLGNS WAECLSALDP PVKERLARYQ V
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAALYNSL DKYLQGLFVL ANDPVPEVRK LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNRDPDEEVS LEACEFWSAY CDAQLPPENL
301: KEFLPRLIPV LLENMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQKNLS
401: ASGDEAWKQR EAAVLALGAI AEGCMNGLYP HLSEIVAFLL PLLDDKFPLI RSISCWTLSR FGKYLIQESG NPKGYEQFEK VLMGLLRRLL DTNKRVQEAA
501: CSAFATVEED AAEELVPHLG VILQHLMCAF GKYQRRNLRI VYDAIGTLAD SVREELNKPA YLEILMPPLV AKWQQLSNSD KDLFPLLECF TSISQALGVG
601: FAPFAQPVFQ RCMDIIQLQQ LAKVNPASAG AQYDREFIVC SLDLLSGLAE GLGSGIESLV QQSNLRDLLL NCCIDEAADV RQSAFALMGD LARVFPVYLQ
701: PRLLDFLEIA SQQLSANLNR ENLSVANNAC WAIGELAVKV RQEVSPIVAK VVSSLGLILQ HGEGVNKALV ENSAITLGRL AWIRPDLVAP HMDHFMKPWC
801: MALSMVRDDI EKEDAFRGLC AVVKVNPSGG VSSLVFICQA IASWHEIRSE DVQTEVSQVL NGYKHMLGNS WAECLSALDP PVKERLARYQ V
Arabidopsis Description
TRN1transportin 1 [Source:TAIR;Acc:AT2G16950]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.