Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G624100.1 | Wheat | cytosol | 99.55 | 99.55 |
| TraesCS2A01G562500.1 | Wheat | golgi | 99.44 | 99.44 |
| HORVU2Hr1G126610.7 | Barley | cytosol | 97.1 | 98.53 |
| EES11709 | Sorghum | cytosol | 89.41 | 90.21 |
| Zm00001d002936_P010 | Maize | cytosol | 88.85 | 89.45 |
| Os04t0691500-01 | Rice | cytosol, plasma membrane | 76.25 | 89.06 |
| Zm00001d026696_P005 | Maize | cytosol | 87.96 | 88.65 |
| GSMUA_Achr8P34170_001 | Banana | cytosol | 77.26 | 77.78 |
| VIT_03s0038g02830.t01 | Wine grape | cytosol | 74.69 | 74.78 |
| KRG90653 | Soybean | cytosol | 73.91 | 74.0 |
| KRH36099 | Soybean | cytosol | 73.47 | 73.8 |
| GSMUA_Achr4P16350_001 | Banana | cytosol | 25.42 | 73.55 |
| Solyc01g111780.2.1 | Tomato | nucleus, plastid | 72.69 | 73.26 |
| VIT_18s0001g00910.t01 | Wine grape | cytosol | 69.9 | 70.69 |
| AT2G16950.1 | Thale cress | cytosol | 69.9 | 70.06 |
| CDY02225 | Canola | cytosol | 68.56 | 69.73 |
| CDY47482 | Canola | cytosol | 68.56 | 69.65 |
| Bra013038.1-P | Field mustard | cytosol | 68.34 | 69.58 |
| Bra002011.1-P | Field mustard | cytosol | 68.23 | 69.47 |
| Bra037286.1-P | Field mustard | cytosol | 69.01 | 69.16 |
| CDY31391 | Canola | cytosol | 68.0 | 69.16 |
| CDX89768 | Canola | cytosol | 66.56 | 68.23 |
| CDY26790 | Canola | cytosol | 8.81 | 66.95 |
| CDY26791 | Canola | cytosol | 9.36 | 65.62 |
| CDY71774 | Canola | cytosol | 20.07 | 63.6 |
| AT2G16953.1 | Thale cress | cytosol | 3.79 | 53.12 |
| CDY54431 | Canola | cytosol | 68.78 | 51.63 |
| AT2G16960.1 | Thale cress | cytosol | 31.44 | 51.09 |
| Bra010184.1-P | Field mustard | cytosol, mitochondrion | 16.05 | 47.21 |
| TraesCS4D01G193700.1 | Wheat | endoplasmic reticulum | 19.4 | 19.73 |
| TraesCS5D01G094600.1 | Wheat | cytosol | 18.84 | 19.38 |
| TraesCS1D01G224400.2 | Wheat | golgi | 18.62 | 19.24 |
| TraesCS5D01G095100.1 | Wheat | golgi | 18.62 | 19.15 |
| TraesCS1D01G066600.1 | Wheat | cytosol | 18.73 | 19.13 |
| TraesCS5D01G042900.2 | Wheat | cytosol | 15.05 | 16.01 |
| TraesCS3D01G318400.1 | Wheat | cytosol, peroxisome, plastid | 11.59 | 15.95 |
| TraesCS5D01G057000.1 | Wheat | cytosol | 15.72 | 15.9 |
| TraesCS5D01G022500.1 | Wheat | cytosol | 11.82 | 14.93 |
| TraesCS2D01G480800.1 | Wheat | cytosol | 14.6 | 14.54 |
| TraesCS2D01G434400.1 | Wheat | cytosol | 7.92 | 14.34 |
| TraesCS2D01G480100.1 | Wheat | cytosol | 14.6 | 14.09 |
| TraesCS2D01G341200.1 | Wheat | cytosol | 13.38 | 13.45 |
| Os04t0691600-02 | Rice | plastid | 1.23 | 7.59 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:23.5.1.2.2 | InterPro:ARM-like | InterPro:ARM-type_fold | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0008536 | InterPro:HEAT |
| InterPro:IPR001494 | InterPro:IPR011989 | InterPro:Importin-beta_N | PFAM:PF02985 | PFAM:PF03810 | PFAM:PF13513 |
| PFscan:PS50166 | PANTHER:PTHR10527 | PANTHER:PTHR10527:SF3 | SMART:SM00913 | SUPFAM:SSF48371 | EnsemblPlantsGene:TraesCS2D01G572700 |
| EnsemblPlants:TraesCS2D01G572700.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2D:-:638368029..638378283
Molecular Weight (calculated)
98998.2 Da
IEP (calculated)
4.475
GRAVY (calculated)
0.063
Length
897 amino acids
Sequence
(BLAST)
(BLAST)
001: MATAAGATGA AALWQPQEEG LREICAVLEA HISPNSDQAR IWQQLQHYAQ FPDFNNYLVF LLARGQGKSF EVRQAAGLLL KNNLRAAFVS MPPSSQQYIK
101: SELLPCIGAN NRAIRSTVGT VISVLFQIVG VTGWIELFQA LHQCLDSNDL DHMEGAMDAI YKICEDVPEE LDVDVPGLSE RPINVFMPRM LQFFQSPHAS
201: LRKLSLGCIN QYIVVMPSAL YMAMDQYLQG LFVLVKDPSA DVRKLVCSAW VQLIEVRPSI LEPHLKNVTE LILQANKDSD DEVALEACEF WSAYCDVSMP
301: PEGLREFLPR LIPTLVSNMV YTDDDESLAD AEEDESFPDR DQDLKPRFHA SRLHGSENGE EDDDDDAVNA WNLRKCSAAG LDVLSNVFGD DILPTLMPLI
401: QQNLARTDDE SWKEREAAVL SIGAIAEGCI TGLYPHLPQM VAFLIPLLDD KFPLIRSITC WTLSRYSKFI VQSLGHPNGR EQFDKILMGL LRRILDTNKR
501: VQEAACSAFA TLEEEAAEEL VPRLEVILQH LMCAYGKYQR RNLRILYDAL GTLADAVGAE LNQAKYLDIF MPPLIAKWQQ LPNSDKDLFP LLECFTSIAQ
601: ALGPGFSQFA EPVFVRCISL IQTQQLAKVD PAAAGALYDK EFIVCALDLL SGLTEGLGGG IESLVAQSNL RDLLLQCCVD EAPDVRQSAL ALLGDISRVC
701: PIHLQPRLQE FLTAAAKQLT PQSVKDAVSV ANNACWAIGE LAIKIGKEIS PVVISVVSCL VPILTTPESL NKSLIENSAI TLGRLSWVCP DIVAPHMEHF
801: MQAWCNALCM IRDDFEKEDA FHGLCAMVAA NPTGAVSSLA NVCQACASWN EIKSEGLHNE VSQILNGYKQ MLGAAGWEQC MSTLEPAVVQ RLARYGV
101: SELLPCIGAN NRAIRSTVGT VISVLFQIVG VTGWIELFQA LHQCLDSNDL DHMEGAMDAI YKICEDVPEE LDVDVPGLSE RPINVFMPRM LQFFQSPHAS
201: LRKLSLGCIN QYIVVMPSAL YMAMDQYLQG LFVLVKDPSA DVRKLVCSAW VQLIEVRPSI LEPHLKNVTE LILQANKDSD DEVALEACEF WSAYCDVSMP
301: PEGLREFLPR LIPTLVSNMV YTDDDESLAD AEEDESFPDR DQDLKPRFHA SRLHGSENGE EDDDDDAVNA WNLRKCSAAG LDVLSNVFGD DILPTLMPLI
401: QQNLARTDDE SWKEREAAVL SIGAIAEGCI TGLYPHLPQM VAFLIPLLDD KFPLIRSITC WTLSRYSKFI VQSLGHPNGR EQFDKILMGL LRRILDTNKR
501: VQEAACSAFA TLEEEAAEEL VPRLEVILQH LMCAYGKYQR RNLRILYDAL GTLADAVGAE LNQAKYLDIF MPPLIAKWQQ LPNSDKDLFP LLECFTSIAQ
601: ALGPGFSQFA EPVFVRCISL IQTQQLAKVD PAAAGALYDK EFIVCALDLL SGLTEGLGGG IESLVAQSNL RDLLLQCCVD EAPDVRQSAL ALLGDISRVC
701: PIHLQPRLQE FLTAAAKQLT PQSVKDAVSV ANNACWAIGE LAIKIGKEIS PVVISVVSCL VPILTTPESL NKSLIENSAI TLGRLSWVCP DIVAPHMEHF
801: MQAWCNALCM IRDDFEKEDA FHGLCAMVAA NPTGAVSSLA NVCQACASWN EIKSEGLHNE VSQILNGYKQ MLGAAGWEQC MSTLEPAVVQ RLARYGV
001: MAATAVVWQP RDDGLAEICS LLEQQISPSS VVDKSQIWKQ LQHFSQFPDF NNYLVFILVR AEGKSVEVRQ AAGLLLKNNL RGAYPSMTQE NQKYIKSELL
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAALYNSL DKYLQGLFVL ANDPVPEVRK LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNRDPDEEVS LEACEFWSAY CDAQLPPENL
301: KEFLPRLIPV LLENMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQKNLS
401: ASGDEAWKQR EAAVLALGAI AEGCMNGLYP HLSEIVAFLL PLLDDKFPLI RSISCWTLSR FGKYLIQESG NPKGYEQFEK VLMGLLRRLL DTNKRVQEAA
501: CSAFATVEED AAEELVPHLG VILQHLMCAF GKYQRRNLRI VYDAIGTLAD SVREELNKPA YLEILMPPLV AKWQQLSNSD KDLFPLLECF TSISQALGVG
601: FAPFAQPVFQ RCMDIIQLQQ LAKVNPASAG AQYDREFIVC SLDLLSGLAE GLGSGIESLV QQSNLRDLLL NCCIDEAADV RQSAFALMGD LARVFPVYLQ
701: PRLLDFLEIA SQQLSANLNR ENLSVANNAC WAIGELAVKV RQEVSPIVAK VVSSLGLILQ HGEGVNKALV ENSAITLGRL AWIRPDLVAP HMDHFMKPWC
801: MALSMVRDDI EKEDAFRGLC AVVKVNPSGG VSSLVFICQA IASWHEIRSE DVQTEVSQVL NGYKHMLGNS WAECLSALDP PVKERLARYQ V
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAALYNSL DKYLQGLFVL ANDPVPEVRK LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNRDPDEEVS LEACEFWSAY CDAQLPPENL
301: KEFLPRLIPV LLENMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQKNLS
401: ASGDEAWKQR EAAVLALGAI AEGCMNGLYP HLSEIVAFLL PLLDDKFPLI RSISCWTLSR FGKYLIQESG NPKGYEQFEK VLMGLLRRLL DTNKRVQEAA
501: CSAFATVEED AAEELVPHLG VILQHLMCAF GKYQRRNLRI VYDAIGTLAD SVREELNKPA YLEILMPPLV AKWQQLSNSD KDLFPLLECF TSISQALGVG
601: FAPFAQPVFQ RCMDIIQLQQ LAKVNPASAG AQYDREFIVC SLDLLSGLAE GLGSGIESLV QQSNLRDLLL NCCIDEAADV RQSAFALMGD LARVFPVYLQ
701: PRLLDFLEIA SQQLSANLNR ENLSVANNAC WAIGELAVKV RQEVSPIVAK VVSSLGLILQ HGEGVNKALV ENSAITLGRL AWIRPDLVAP HMDHFMKPWC
801: MALSMVRDDI EKEDAFRGLC AVVKVNPSGG VSSLVFICQA IASWHEIRSE DVQTEVSQVL NGYKHMLGNS WAECLSALDP PVKERLARYQ V
Arabidopsis Description
TRN1transportin 1 [Source:TAIR;Acc:AT2G16950]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.