Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G193100.1 | Wheat | mitochondrion, nucleus | 98.74 | 98.74 |
| TraesCS5B01G185900.1 | Wheat | mitochondrion, nucleus | 98.53 | 98.53 |
| HORVU5Hr1G041780.3 | Barley | plastid | 91.6 | 80.59 |
| Os09t0242300-00 | Rice | plastid | 79.2 | 78.87 |
| TraesCS5A01G272600.1 | Wheat | plastid | 72.69 | 74.09 |
| TraesCS6A01G268900.1 | Wheat | plastid | 73.32 | 73.63 |
| GSMUA_Achr11P... | Banana | plastid | 72.06 | 72.36 |
| GSMUA_Achr5P18020_001 | Banana | nucleus, plastid | 71.85 | 72.3 |
| GSMUA_Achr8P14580_001 | Banana | nucleus, plastid | 70.17 | 69.44 |
| VIT_15s0107g00320.t01 | Wine grape | nucleus | 63.66 | 67.33 |
| PGSC0003DMT400069533 | Potato | nucleus, plastid | 63.66 | 66.59 |
| Solyc06g072830.2.1 | Tomato | nucleus, plastid | 63.24 | 66.15 |
| TraesCS2A01G440000.2 | Wheat | nucleus | 68.07 | 66.12 |
| PGSC0003DMT400001467 | Potato | nucleus | 62.6 | 65.78 |
| VIT_05s0102g00550.t01 | Wine grape | nucleus | 56.93 | 65.62 |
| VIT_05s0102g00640.t01 | Wine grape | nucleus | 56.93 | 65.62 |
| Solyc03g096870.2.1 | Tomato | nucleus | 62.4 | 65.56 |
| VIT_05s0102g00680.t01 | Wine grape | nucleus | 56.93 | 65.3 |
| AT4G33260.1 | Thale cress | nucleus | 61.13 | 65.1 |
| VIT_05s0029g01120.t01 | Wine grape | nucleus | 56.3 | 64.89 |
| Bra037011.1-P | Field mustard | nucleus | 56.72 | 64.44 |
| AT4G33270.1 | Thale cress | nucleus | 61.76 | 64.33 |
| VIT_16s0039g02510.t01 | Wine grape | nucleus | 60.08 | 63.41 |
| TraesCS6A01G085400.1 | Wheat | nucleus | 50.0 | 62.3 |
| Bra005544.1-P | Field mustard | nucleus | 57.14 | 61.96 |
| PGSC0003DMT400047585 | Potato | nucleus | 56.93 | 60.49 |
| Bra034555.1-P | Field mustard | nucleus | 48.11 | 60.42 |
| Solyc08g005420.2.1 | Tomato | nucleus | 56.72 | 60.27 |
| AT5G27570.1 | Thale cress | nucleus | 56.3 | 59.56 |
| AT5G27080.1 | Thale cress | nucleus | 54.41 | 58.6 |
| AT5G26900.1 | Thale cress | nucleus | 54.62 | 58.56 |
| Bra008327.1-P | Field mustard | cytosol, mitochondrion | 50.84 | 56.54 |
| AT5G27945.1 | Thale cress | cytosol, plastid, vacuole | 45.8 | 50.93 |
| VIT_16s0039g02620.t01 | Wine grape | cytosol | 23.53 | 48.28 |
| KRH08491 | Soybean | cytosol | 13.45 | 45.71 |
| CDX98239 | Canola | nucleus | 11.55 | 41.04 |
| Bra011430.1-P | Field mustard | cytosol | 61.55 | 40.98 |
| TraesCS3A01G527600.1 | Wheat | plastid | 38.24 | 37.37 |
Protein Annotations
| MapMan:13.3.4.1.4 | Gene3D:2.130.10.10 | InterPro:Apc4_WD40_dom | InterPro:Cdc20/Fizzy | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010997 |
| GO:GO:0019538 | GO:GO:0030234 | GO:GO:0097027 | GO:GO:1904668 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | PFAM:PF00400 | PFAM:PF12894 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 |
| PANTHER:PTHR19918 | PANTHER:PTHR19918:SF12 | SMART:SM00320 | SUPFAM:SSF50978 | EnsemblPlantsGene:TraesCS5A01G197800 | EnsemblPlants:TraesCS5A01G197800.2 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | TIGR:cd00200 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr5A:-:401758884..401763162
Molecular Weight (calculated)
52419.3 Da
IEP (calculated)
8.804
GRAVY (calculated)
-0.377
Length
476 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAAGSSSSR PPKRRRPGLR PSAPLEVAGA RTPYMPSLCT NSKNPSTKCY GDRFIPDRSA MDMDMAYYLL TEPKKGKENE AVVSPAKEAY RRLLAEKLLG
101: SRTRILAFRN KPPEPEGMLP QILFETPTSS QTKPTKQRRK IPQFAERTLD APGVVDDYYL NVLDWGSKNL VSVALENTLY LWNASDSSTS ELVTVDADYG
201: PITSVSWACE GQHIAVGLNS SDIQLWDTSS NRMLRTLRGV HESRVGSLAW NSSILTTGGM DGKIVNNDVR MRSHMVQTYR GHEAEVCGLR WSGSLQQLAS
301: GGNDNLVHIW DASMASSNPS LGHNRWLHRF SDHLSAVKAL AWCPFQSNLL ASGGGGNDRC IKFWNTHTGL CLNSVDTGAQ VCALLWNKNE KELLSACGFV
401: QKPLTLWKYP SMVKLAELEG HTSRVLCLAQ SPDGPTVASV AADETLRFWN VFGTSEAPKP AAKTVHTGMF SFSHIR
101: SRTRILAFRN KPPEPEGMLP QILFETPTSS QTKPTKQRRK IPQFAERTLD APGVVDDYYL NVLDWGSKNL VSVALENTLY LWNASDSSTS ELVTVDADYG
201: PITSVSWACE GQHIAVGLNS SDIQLWDTSS NRMLRTLRGV HESRVGSLAW NSSILTTGGM DGKIVNNDVR MRSHMVQTYR GHEAEVCGLR WSGSLQQLAS
301: GGNDNLVHIW DASMASSNPS LGHNRWLHRF SDHLSAVKAL AWCPFQSNLL ASGGGGNDRC IKFWNTHTGL CLNSVDTGAQ VCALLWNKNE KELLSACGFV
401: QKPLTLWKYP SMVKLAELEG HTSRVLCLAQ SPDGPTVASV AADETLRFWN VFGTSEAPKP AAKTVHTGMF SFSHIR
001: MDAGLNRCPL QEHFLPRKNS KENLDRFIPN RSAMNFDYAH FALTEERKGK DQSATVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV ELLPSNHSAS
101: LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG LNNSEVQLWD
201: SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS NSTTQWLHRL
301: EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG HTSRVLYMAQ
401: SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVAEPF SHVNRIR
101: LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG LNNSEVQLWD
201: SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS NSTTQWLHRL
301: EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG HTSRVLYMAQ
401: SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVAEPF SHVNRIR
Arabidopsis Description
CDC20-2Cell division cycle 20.2, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9S7I8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.