Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G321000.1 | Wheat | cytosol | 99.42 | 99.42 |
| TraesCS2B01G361700.1 | Wheat | cytosol | 98.95 | 98.95 |
| HORVU2Hr1G083840.8 | Barley | cytosol | 59.42 | 97.71 |
| HORVU0Hr1G004870.2 | Barley | cytosol | 24.65 | 90.99 |
| KXG20781 | Sorghum | cytosol | 86.16 | 86.26 |
| Os04t0484800-01 | Rice | cytosol | 86.05 | 85.65 |
| Zm00001d014685_P009 | Maize | cytosol | 85.12 | 85.12 |
| HORVU0Hr1G004980.2 | Barley | cytosol | 32.56 | 81.63 |
| KRH32716 | Soybean | golgi | 23.37 | 70.28 |
| GSMUA_Achr3P19380_001 | Banana | cytosol | 71.16 | 69.94 |
| VIT_01s0026g02730.t01 | Wine grape | cytosol | 67.91 | 66.14 |
| AT2G04660.1 | Thale cress | cytosol | 62.67 | 62.31 |
| KRG97883 | Soybean | cytosol | 63.95 | 62.15 |
| PGSC0003DMT400047444 | Potato | cytosol | 63.49 | 61.76 |
| KRH30995 | Soybean | cytosol | 63.37 | 61.65 |
| Solyc05g007750.2.1 | Tomato | cytosol | 63.02 | 61.38 |
| CDY04835 | Canola | cytosol | 60.7 | 61.2 |
| Bra025616.1-P | Field mustard | cytosol | 59.19 | 61.1 |
| Bra028905.1-P | Field mustard | cytosol | 60.58 | 60.86 |
| CDY30835 | Canola | cytosol | 59.3 | 60.86 |
| CDY30292 | Canola | cytosol | 58.84 | 59.74 |
| KRH74904 | Soybean | cytosol, extracellular, peroxisome | 4.53 | 36.45 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:1.10.10.2620 | Gene3D:1.20.1310.10 | MapMan:13.3.4.1.1.3.1 | InterPro:APC_su2_C | InterPro:Cullin_N |
| InterPro:Cullin_homology | InterPro:Cullin_homology_sf | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005819 | GO:GO:0005856 | GO:GO:0006511 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009561 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0031625 | InterPro:IPR016158 | InterPro:IPR036388 | PFAM:PF00888 | PFAM:PF08672 |
| PFscan:PS50069 | PANTHER:PTHR11932 | PANTHER:PTHR11932:SF5 | SMART:SM00182 | SMART:SM01013 | SUPFAM:SSF46785 |
| SUPFAM:SSF75632 | EnsemblPlantsGene:TraesCS2D01G341700 | EnsemblPlants:TraesCS2D01G341700.1 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg |
Description
No Description!
Coordinates
chr2D:-:436372998..436381478
Molecular Weight (calculated)
96369.8 Da
IEP (calculated)
4.656
GRAVY (calculated)
-0.228
Length
860 amino acids
Sequence
(BLAST)
(BLAST)
001: MQLDDSDGAL GSWARFCALS GELVGGAGDL SVGPRLAPVV ADLCARGLAT LVRDYFLHNL EETFRNNAVK MFWQKFHPYS SSSAVERIKF CVQESWPEDV
101: LSAALEDICL EKSYQEKCVL VLAHALQSYE EKAQNRKLKA VQCSSSLMPR YQLMVSSVLL TTLPLSFPEI LNVYFKKKLE ELNTMVDASD ENDQLASHEL
201: FGRSNVSAWD SKMDIDSQET VISESCTLVK NIGKVVRDFR CLGFTSMTED SYSSAIIWLL KSKVYELAGD DYRIPVLGSV NKWIQVVPLQ FLHALLTYLG
301: DSVDYDSGLS GLKSPLASRP SSFPGIGVPS EALLRWHMRL EYFAYETLQD LRIGKLFEII VDYPESSPAI EDLKQCLEYT GQHSKLVDSF ISSLRYRLLT
401: AGASTNDILH QYVSTIKALR SIDPTGVFLE AVGEPIRDYL RGRKDTIKCI VTMLTDGSGG NTSGGNAGDN LLEELNRDAE NQENADYDDH TNIDEKQAWL
501: NSESWEPDPV EADPLKGSRS RRKIDILGLM VSIIGSKDQL VNEYRVMLAE KLLSKSDFDI DSDIRTLELL KIHFGESSMQ KCEIMLNDLI DSKRTNSNIK
601: TSLLNAPGTV AGQEEAEISH DVLDATIISS NFWPPIQTED LAVPASVDKL LSDFAQRFHQ IKTPRKLLWK KNLGTVKLEL QFEDRSMQFT VVPVQAAIIM
701: RFQEKPSWTS KALATEIGIP VDSLNRRIGF WTSKGVLTES VGPDADDHIF TIVDSMSDVN KNSIVNESCE AFQMNEDEGE SSVASVEEQL KKEMTVYEKF
801: IIGMLTNFGN MTLDKIHNTL KMFCAEPSYD KSLQQLQSFL SGLVSDEKLE MRDGLYLLKK
101: LSAALEDICL EKSYQEKCVL VLAHALQSYE EKAQNRKLKA VQCSSSLMPR YQLMVSSVLL TTLPLSFPEI LNVYFKKKLE ELNTMVDASD ENDQLASHEL
201: FGRSNVSAWD SKMDIDSQET VISESCTLVK NIGKVVRDFR CLGFTSMTED SYSSAIIWLL KSKVYELAGD DYRIPVLGSV NKWIQVVPLQ FLHALLTYLG
301: DSVDYDSGLS GLKSPLASRP SSFPGIGVPS EALLRWHMRL EYFAYETLQD LRIGKLFEII VDYPESSPAI EDLKQCLEYT GQHSKLVDSF ISSLRYRLLT
401: AGASTNDILH QYVSTIKALR SIDPTGVFLE AVGEPIRDYL RGRKDTIKCI VTMLTDGSGG NTSGGNAGDN LLEELNRDAE NQENADYDDH TNIDEKQAWL
501: NSESWEPDPV EADPLKGSRS RRKIDILGLM VSIIGSKDQL VNEYRVMLAE KLLSKSDFDI DSDIRTLELL KIHFGESSMQ KCEIMLNDLI DSKRTNSNIK
601: TSLLNAPGTV AGQEEAEISH DVLDATIISS NFWPPIQTED LAVPASVDKL LSDFAQRFHQ IKTPRKLLWK KNLGTVKLEL QFEDRSMQFT VVPVQAAIIM
701: RFQEKPSWTS KALATEIGIP VDSLNRRIGF WTSKGVLTES VGPDADDHIF TIVDSMSDVN KNSIVNESCE AFQMNEDEGE SSVASVEEQL KKEMTVYEKF
801: IIGMLTNFGN MTLDKIHNTL KMFCAEPSYD KSLQQLQSFL SGLVSDEKLE MRDGLYLLKK
001: MEALGSSDCN LEILETLSDD AIQEITESYD GFFTTVESLI AGTGDSLVED EFVSHVYCLC KYGLDSLVRD HFLRSLEQAF EKGGASSFWQ HFDAYSEKKH
101: HNYGEEIQIV LCKALEEISI EKQYHEKCLS IVVHALQSFK EQSSDDRQNS DTERVHLFSR FQSMLSSTLM TTLPQHFPEI LHWYFKERLE ELSAIMDGDG
201: IEEQEDDCMD LDEKLRYKNG EMDVDEGCSQ GKRLGHDKLV KNIGKVVRDL RSIGFTSMAE NAYASAIFLL LKAKVHDLAG DDYRTSVLES IKEWIQTVPL
301: QFLNALLSYL GDSVSYGTTS SGLTSPLACC PSPSFSRVVT PSEGIVRWKL RLEYFAYETL QDLRIAKLFE IIVDYPESSP AIEDLKQCLE YTGQHSKLVE
401: SFISSLKYRL LTAGASTNDI LHQYVSTIKA LRAIDPAGVF LEAVGEPIRD YLRGRKDTIK CIVTMLTDGS GGNANGSGNP GDSLLEELMR DEESQENVGF
501: DDDFHTDDKQ AWINASRWEP DPVEADPLKG SLSQRKVDIL GMLVDIIGSK EQLVNEYRVM LAEKLLNKTD YDIDTEIRTV ELLKIHFGEA SMQRCEIMLN
601: DLIDSKRVNT NIKKASQTGA ELRENELSVD TLTSTILSTN FWPPIQDEPL ELPGPVDKLL SDYANRYHEI KTPRKLLWKK NLGTVKLELQ FEDRAMQFTV
701: SPTHAAIIMQ FQEKKSWTYK DLAEVIGIPI DALNRRVNFW ISKGVLREST GANSNSSVLT LVESITDSGK NEGEELLTGE EEGETSIASV EDQLRKEMTI
801: YEKFIMGMLT NFGSMALERI HNTLKMFCVA DPSYDKSLQQ LQSFLSGLVS EEKLEFRDGM YLLKK
101: HNYGEEIQIV LCKALEEISI EKQYHEKCLS IVVHALQSFK EQSSDDRQNS DTERVHLFSR FQSMLSSTLM TTLPQHFPEI LHWYFKERLE ELSAIMDGDG
201: IEEQEDDCMD LDEKLRYKNG EMDVDEGCSQ GKRLGHDKLV KNIGKVVRDL RSIGFTSMAE NAYASAIFLL LKAKVHDLAG DDYRTSVLES IKEWIQTVPL
301: QFLNALLSYL GDSVSYGTTS SGLTSPLACC PSPSFSRVVT PSEGIVRWKL RLEYFAYETL QDLRIAKLFE IIVDYPESSP AIEDLKQCLE YTGQHSKLVE
401: SFISSLKYRL LTAGASTNDI LHQYVSTIKA LRAIDPAGVF LEAVGEPIRD YLRGRKDTIK CIVTMLTDGS GGNANGSGNP GDSLLEELMR DEESQENVGF
501: DDDFHTDDKQ AWINASRWEP DPVEADPLKG SLSQRKVDIL GMLVDIIGSK EQLVNEYRVM LAEKLLNKTD YDIDTEIRTV ELLKIHFGEA SMQRCEIMLN
601: DLIDSKRVNT NIKKASQTGA ELRENELSVD TLTSTILSTN FWPPIQDEPL ELPGPVDKLL SDYANRYHEI KTPRKLLWKK NLGTVKLELQ FEDRAMQFTV
701: SPTHAAIIMQ FQEKKSWTYK DLAEVIGIPI DALNRRVNFW ISKGVLREST GANSNSSVLT LVESITDSGK NEGEELLTGE EEGETSIASV EDQLRKEMTI
801: YEKFIMGMLT NFGSMALERI HNTLKMFCVA DPSYDKSLQQ LQSFLSGLVS EEKLEFRDGM YLLKK
Arabidopsis Description
APC2APC2 [Source:UniProtKB/TrEMBL;Acc:A0A178VYA9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.