Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028905.1-P | Field mustard | cytosol | 86.82 | 87.73 |
| CDY04835 | Canola | cytosol | 86.01 | 87.22 |
| CDY30292 | Canola | cytosol | 83.58 | 85.36 |
| Bra025616.1-P | Field mustard | cytosol | 80.81 | 83.91 |
| CDY30835 | Canola | cytosol | 80.92 | 83.53 |
| KRH32716 | Soybean | golgi | 24.62 | 74.48 |
| HORVU2Hr1G083840.8 | Barley | cytosol | 44.74 | 74.0 |
| VIT_01s0026g02730.t01 | Wine grape | cytosol | 73.18 | 71.69 |
| KRG97883 | Soybean | cytosol | 70.98 | 69.38 |
| KRH30995 | Soybean | cytosol | 70.29 | 68.78 |
| PGSC0003DMT400047444 | Potato | cytosol | 69.71 | 68.21 |
| Solyc05g007750.2.1 | Tomato | cytosol | 69.36 | 67.95 |
| HORVU0Hr1G004870.2 | Barley | cytosol | 17.8 | 66.09 |
| GSMUA_Achr3P19380_001 | Banana | cytosol | 66.01 | 65.26 |
| HORVU0Hr1G004980.2 | Barley | cytosol | 25.66 | 64.72 |
| Os04t0484800-01 | Rice | cytosol | 63.58 | 63.66 |
| KXG20781 | Sorghum | cytosol | 63.01 | 63.45 |
| TraesCS2A01G321000.1 | Wheat | cytosol | 62.54 | 62.91 |
| Zm00001d014685_P009 | Maize | cytosol | 62.54 | 62.91 |
| TraesCS2D01G341700.1 | Wheat | cytosol | 62.31 | 62.67 |
| TraesCS2B01G361700.1 | Wheat | cytosol | 62.2 | 62.56 |
| KRH74904 | Soybean | cytosol, extracellular, peroxisome | 5.09 | 41.12 |
| HORVU0Hr1G004910.1 | Barley | cytosol | 5.43 | 37.9 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:1.10.10.2620 | Gene3D:1.20.1310.10 | MapMan:13.3.4.1.1.3.1 | EntrezGene:815008 | UniProt:A0A178VYA9 |
| ProteinID:AAD22340.1 | ProteinID:AEC05853.1 | EMBL:AK118453 | Symbol:APC2 | InterPro:APC_su2_C | ArrayExpress:AT2G04660 |
| EnsemblPlantsGene:AT2G04660 | RefSeq:AT2G04660 | TAIR:AT2G04660 | RefSeq:AT2G04660-TAIR-G | EnsemblPlants:AT2G04660.1 | TAIR:AT2G04660.1 |
| EMBL:AY138228 | Unigene:At.41283 | InterPro:Cullin_N | InterPro:Cullin_homology | InterPro:Cullin_homology_sf | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005680 | GO:GO:0005819 | GO:GO:0005856 | GO:GO:0006464 | GO:GO:0006511 |
| GO:GO:0007049 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009561 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0031625 | GO:GO:0042787 |
| GO:GO:0051301 | GO:GO:0061630 | InterPro:IPR016158 | InterPro:IPR036388 | RefSeq:NP_178543.2 | ProteinID:OAP10245.1 |
| PFAM:PF00888 | PFAM:PF08672 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 | PFscan:PS50069 | PANTHER:PTHR11932 | PANTHER:PTHR11932:SF5 |
| UniProt:Q8H1U5 | SMART:SM00182 | SMART:SM01013 | SUPFAM:SSF46785 | SUPFAM:SSF75632 | UniParc:UPI00000ADA1F |
| InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : | : | : |
Description
APC2APC2 [Source:UniProtKB/TrEMBL;Acc:A0A178VYA9]
Coordinates
chr2:+:1624630..1629259
Molecular Weight (calculated)
97795.9 Da
IEP (calculated)
4.528
GRAVY (calculated)
-0.345
Length
865 amino acids
Sequence
(BLAST)
(BLAST)
001: MEALGSSDCN LEILETLSDD AIQEITESYD GFFTTVESLI AGTGDSLVED EFVSHVYCLC KYGLDSLVRD HFLRSLEQAF EKGGASSFWQ HFDAYSEKKH
101: HNYGEEIQIV LCKALEEISI EKQYHEKCLS IVVHALQSFK EQSSDDRQNS DTERVHLFSR FQSMLSSTLM TTLPQHFPEI LHWYFKERLE ELSAIMDGDG
201: IEEQEDDCMD LDEKLRYKNG EMDVDEGCSQ GKRLGHDKLV KNIGKVVRDL RSIGFTSMAE NAYASAIFLL LKAKVHDLAG DDYRTSVLES IKEWIQTVPL
301: QFLNALLSYL GDSVSYGTTS SGLTSPLACC PSPSFSRVVT PSEGIVRWKL RLEYFAYETL QDLRIAKLFE IIVDYPESSP AIEDLKQCLE YTGQHSKLVE
401: SFISSLKYRL LTAGASTNDI LHQYVSTIKA LRAIDPAGVF LEAVGEPIRD YLRGRKDTIK CIVTMLTDGS GGNANGSGNP GDSLLEELMR DEESQENVGF
501: DDDFHTDDKQ AWINASRWEP DPVEADPLKG SLSQRKVDIL GMLVDIIGSK EQLVNEYRVM LAEKLLNKTD YDIDTEIRTV ELLKIHFGEA SMQRCEIMLN
601: DLIDSKRVNT NIKKASQTGA ELRENELSVD TLTSTILSTN FWPPIQDEPL ELPGPVDKLL SDYANRYHEI KTPRKLLWKK NLGTVKLELQ FEDRAMQFTV
701: SPTHAAIIMQ FQEKKSWTYK DLAEVIGIPI DALNRRVNFW ISKGVLREST GANSNSSVLT LVESITDSGK NEGEELLTGE EEGETSIASV EDQLRKEMTI
801: YEKFIMGMLT NFGSMALERI HNTLKMFCVA DPSYDKSLQQ LQSFLSGLVS EEKLEFRDGM YLLKK
101: HNYGEEIQIV LCKALEEISI EKQYHEKCLS IVVHALQSFK EQSSDDRQNS DTERVHLFSR FQSMLSSTLM TTLPQHFPEI LHWYFKERLE ELSAIMDGDG
201: IEEQEDDCMD LDEKLRYKNG EMDVDEGCSQ GKRLGHDKLV KNIGKVVRDL RSIGFTSMAE NAYASAIFLL LKAKVHDLAG DDYRTSVLES IKEWIQTVPL
301: QFLNALLSYL GDSVSYGTTS SGLTSPLACC PSPSFSRVVT PSEGIVRWKL RLEYFAYETL QDLRIAKLFE IIVDYPESSP AIEDLKQCLE YTGQHSKLVE
401: SFISSLKYRL LTAGASTNDI LHQYVSTIKA LRAIDPAGVF LEAVGEPIRD YLRGRKDTIK CIVTMLTDGS GGNANGSGNP GDSLLEELMR DEESQENVGF
501: DDDFHTDDKQ AWINASRWEP DPVEADPLKG SLSQRKVDIL GMLVDIIGSK EQLVNEYRVM LAEKLLNKTD YDIDTEIRTV ELLKIHFGEA SMQRCEIMLN
601: DLIDSKRVNT NIKKASQTGA ELRENELSVD TLTSTILSTN FWPPIQDEPL ELPGPVDKLL SDYANRYHEI KTPRKLLWKK NLGTVKLELQ FEDRAMQFTV
701: SPTHAAIIMQ FQEKKSWTYK DLAEVIGIPI DALNRRVNFW ISKGVLREST GANSNSSVLT LVESITDSGK NEGEELLTGE EEGETSIASV EDQLRKEMTI
801: YEKFIMGMLT NFGSMALERI HNTLKMFCVA DPSYDKSLQQ LQSFLSGLVS EEKLEFRDGM YLLKK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.