Factsheet for Bra028905.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002279.1-P
Bra004677.1-P
Bra005063.1-P
Bra006529.1-P
Bra006530.1-P
Bra007362.1-P
Bra013534.1-P
Bra015512.1-P
Bra018081.1-P
Bra020079.1-P
Bra027173.1-P
Bra032414.1-P
Bra033769.1-P
Bra035062.1-P
Bra039034.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04660.1	Bra015512.1-P	AT1G06590.1	20706207
AT2G04660.1	Bra032414.1-P	AT1G06590.1	20706207
AT2G04660.1	Bra035062.1-P	AT1G78770.1	20706207
AT2G04660.1	Bra039034.1-P	AT2G20000.1	17944809
AT2G04660.1	Bra039034.1-P	AT2G20000.1	20706207
AT2G04660.1	Bra005063.1-P	AT2G39090.1	20706207
AT2G04660.1	Bra004677.1-P	AT2G42260.1	20706207
AT2G04660.1	Bra027173.1-P	AT3G16320.1	20706207
AT2G04660.1	Bra018081.1-P	AT3G48150.1	14508008
AT2G04660.1	Bra033769.1-P	AT3G48150.1	14508008
AT2G04660.1	Bra018081.1-P	AT3G48150.1	20706207
AT2G04660.1	Bra033769.1-P	AT3G48150.1	20706207
AT2G04660.1	Bra007362.1-P	AT3G57860.1	20706207
AT2G04660.1	Bra013534.1-P	AT4G21530.1	20706207
AT2G04660.1	Bra002279.1-P	AT5G19990.1	20706207
AT2G04660.1	Bra006529.1-P	AT5G19990.1	20706207
AT2G04660.1	Bra006530.1-P	AT5G19990.1	20706207
AT2G04660.1	Bra020079.1-P	AT5G19990.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04835	Canola	cytosol	97.9	98.24
AT2G04660.1	Thale cress	cytosol	87.73	86.82
Bra025616.1-P	Field mustard	cytosol	80.61	82.83
HORVU2Hr1G083840.8	Barley	cytosol	44.04	72.08
KRH32716	Soybean	golgi	24.07	72.03
VIT_01s0026g02730.t01	Wine grape	cytosol	70.21	68.06
KRH30995	Soybean	cytosol	68.46	66.29
KRG97883	Soybean	cytosol	68.34	66.1
PGSC0003DMT400047444	Potato	cytosol	67.52	65.38
Solyc05g007750.2.1	Tomato	cytosol	67.29	65.23
GSMUA_Achr3P19380_001	Banana	cytosol	65.42	64.0
HORVU0Hr1G004980.2	Barley	cytosol	25.58	63.85
HORVU0Hr1G004870.2	Barley	cytosol	17.29	63.52
Os04t0484800-01	Rice	cytosol	62.27	61.69
KXG20781	Sorghum	cytosol	61.57	61.35
TraesCS2A01G321000.1	Wheat	cytosol	61.1	60.81
Zm00001d014685_P009	Maize	cytosol	60.98	60.7
TraesCS2D01G341700.1	Wheat	cytosol	60.86	60.58
TraesCS2B01G361700.1	Wheat	cytosol	60.75	60.47
KRH74904	Soybean	cytosol, extracellular, peroxisome	5.26	42.06
HORVU0Hr1G004910.1	Barley	cytosol	4.56	31.45

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	MapMan:13.3.4.1.1.3.1	InterPro:APC_su2_C	EnsemblPlantsGene:Bra028905
EnsemblPlants:Bra028905.1	EnsemblPlants:Bra028905.1-P	InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0019538	GO:GO:0031625	InterPro:IPR016158	InterPro:IPR036388	UniProt:M4EJD9
PFAM:PF00888	PFAM:PF08672	PFscan:PS50069	PANTHER:PTHR11932	PANTHER:PTHR11932:SF5	SMART:SM00182
SMART:SM01013	SUPFAM:SSF46785	SUPFAM:SSF75632	UniParc:UPI00025435CC	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

AT2G04660 (E=0.0) APC2 | APC2; ubiquitin protein ligase binding / ubiquitin-protein ligase

Coordinates

chrA02:-:1491929..1495817

Molecular Weight (calculated)

96459.5 Da

IEP (calculated)

4.529

GRAVY (calculated)

-0.307

Length

856 amino acids

Sequence
(BLAST)

001: MELLGECNLE ILETLSEDAI EEITESYGGF FTTVESLIGG DSSVEQELVC HVSTLCKYGL ASLVRDHFLS SLQQAFDKGG ASTFWLHFDD FRHKQHTDYG
101: EEIHEALCGA LEEISIEKQF HDKCLSILFH ALHSFQQQSS EATIMHNSDS ERVELFSTFR SMLSSTLMTT LPPHFPEILH WYFKEKLEEL SAIMNEDDTQ
201: QLESDGMDLD DKLRSKNGEM DVDEGFSRHD ELVKNIGKVV RDLRSIGFTS MAENAYASAI FLLLKAKVHD LAGDDYRTSV LGSIKEWIQT VPLQFLNALL
301: SYLGDSLSTT QSGLTSPLAC CPSPSFSKVV TPSEGIVRWK LRLEYFAYET LQDLRIAKLF EIIVDYPESS PAIDDLKQCL EYTGQHSKLV ESFISSLKYR
401: LLTAGASTND ILHQYVSTIK ALRAIDPAGV FLEAVGEPIR DYLRGRKDTI KCVVTMLTDG SGGNANGSGN PGDSLLEELM RDEESQENVG FDDDFHTDDK
501: QAWINASRWE PDPVEADPLK GSLSQRKVDI LGMLVDIIGS KEQLVNEYRV MLAEKLLNKT DYDIDTEIRT VELLKIHFGE GSMQRCEIML NDLIDSKRVN
601: TNIKKASQTG TELGEGELSV DILTSTILST NFWPPIQEEP LVLPGPVDKL LSDYASRYHE IKTPRKLLWK KNLGTVKLEL EFEDRAMQFT VSPTHAAIIM
701: QFQEKKSWNS IDLGAATGIP IDVLNRRVNL WISKGVLRET RGREPNGNVY TLVESMTDSG KNESEELLGG DEESERSIAS VEDQLRKEMT IYEKFIMGML
801: TNFGSMALER IHNTLKMFCV ADPSYDKSLQ QLQSFLSGLV SEEKLEFRDG MYLLKK

Best Arabidopsis Sequence Match ( AT2G04660.1 )
(BLAST)

001: MEALGSSDCN LEILETLSDD AIQEITESYD GFFTTVESLI AGTGDSLVED EFVSHVYCLC KYGLDSLVRD HFLRSLEQAF EKGGASSFWQ HFDAYSEKKH
101: HNYGEEIQIV LCKALEEISI EKQYHEKCLS IVVHALQSFK EQSSDDRQNS DTERVHLFSR FQSMLSSTLM TTLPQHFPEI LHWYFKERLE ELSAIMDGDG
201: IEEQEDDCMD LDEKLRYKNG EMDVDEGCSQ GKRLGHDKLV KNIGKVVRDL RSIGFTSMAE NAYASAIFLL LKAKVHDLAG DDYRTSVLES IKEWIQTVPL
301: QFLNALLSYL GDSVSYGTTS SGLTSPLACC PSPSFSRVVT PSEGIVRWKL RLEYFAYETL QDLRIAKLFE IIVDYPESSP AIEDLKQCLE YTGQHSKLVE
401: SFISSLKYRL LTAGASTNDI LHQYVSTIKA LRAIDPAGVF LEAVGEPIRD YLRGRKDTIK CIVTMLTDGS GGNANGSGNP GDSLLEELMR DEESQENVGF
501: DDDFHTDDKQ AWINASRWEP DPVEADPLKG SLSQRKVDIL GMLVDIIGSK EQLVNEYRVM LAEKLLNKTD YDIDTEIRTV ELLKIHFGEA SMQRCEIMLN
601: DLIDSKRVNT NIKKASQTGA ELRENELSVD TLTSTILSTN FWPPIQDEPL ELPGPVDKLL SDYANRYHEI KTPRKLLWKK NLGTVKLELQ FEDRAMQFTV
701: SPTHAAIIMQ FQEKKSWTYK DLAEVIGIPI DALNRRVNFW ISKGVLREST GANSNSSVLT LVESITDSGK NEGEELLTGE EEGETSIASV EDQLRKEMTI
801: YEKFIMGMLT NFGSMALERI HNTLKMFCVA DPSYDKSLQQ LQSFLSGLVS EEKLEFRDGM YLLKK

Arabidopsis Description

APC2APC2 [Source:UniProtKB/TrEMBL;Acc:A0A178VYA9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.