Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU0Hr1G004870.2 | Barley | cytosol | 40.73 | 91.42 |
| HORVU0Hr1G004980.2 | Barley | cytosol | 52.39 | 79.88 |
| TraesCS2D01G341700.1 | Wheat | cytosol | 97.71 | 59.42 |
| TraesCS2A01G321000.1 | Wheat | cytosol | 97.71 | 59.42 |
| TraesCS2B01G361700.1 | Wheat | cytosol | 97.51 | 59.3 |
| KXG20781 | Sorghum | cytosol | 89.48 | 54.48 |
| Zm00001d014685_P009 | Maize | cytosol | 88.72 | 53.95 |
| Os04t0484800-01 | Rice | cytosol | 88.53 | 53.59 |
| GSMUA_Achr3P19380_001 | Banana | cytosol | 79.73 | 47.66 |
| VIT_01s0026g02730.t01 | Wine grape | cytosol | 76.29 | 45.19 |
| AT2G04660.1 | Thale cress | cytosol | 74.0 | 44.74 |
| Bra028905.1-P | Field mustard | cytosol | 72.08 | 44.04 |
| CDY04835 | Canola | cytosol | 71.51 | 43.85 |
| Bra025616.1-P | Field mustard | cytosol | 68.83 | 43.22 |
| PGSC0003DMT400047444 | Potato | cytosol | 72.66 | 42.99 |
| CDY30835 | Canola | cytosol | 68.83 | 42.96 |
| Solyc05g007750.2.1 | Tomato | cytosol | 72.28 | 42.81 |
| KRH30995 | Soybean | cytosol | 72.08 | 42.65 |
| KRG97883 | Soybean | cytosol | 72.08 | 42.6 |
| CDY30292 | Canola | cytosol | 68.83 | 42.5 |
| KRH32716 | Soybean | golgi | 22.56 | 41.26 |
| KRH74904 | Soybean | cytosol, extracellular, peroxisome | 7.46 | 36.45 |
| HORVU0Hr1G004910.1 | Barley | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:1.10.10.2620 | Gene3D:1.20.1310.10 | MapMan:13.3.4.1.1.3.1 | UniProt:A0A287IPJ5 | InterPro:APC_su2_C |
| InterPro:Cullin_N | InterPro:Cullin_homology | InterPro:Cullin_homology_sf | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| GO:GO:0031625 | EnsemblPlantsGene:HORVU2Hr1G083840 | EnsemblPlants:HORVU2Hr1G083840.8 | InterPro:IPR016158 | InterPro:IPR036388 | PFAM:PF00888 |
| PFAM:PF08672 | PFscan:PS50069 | PANTHER:PTHR11932 | PANTHER:PTHR11932:SF5 | SMART:SM00182 | SMART:SM01013 |
| SUPFAM:SSF46785 | SUPFAM:SSF75632 | UniParc:UPI000B469106 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg |
Description
No Description!
Coordinates
chrchr2H:-:607964566..607990039
Molecular Weight (calculated)
58570.7 Da
IEP (calculated)
4.541
GRAVY (calculated)
-0.335
Length
523 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLEYFAYET LQDLRIGKLS EIIVDYPESS PAIEDLKQCL EYTGQHSKLV DSFISSLRYR LLTAGASTND ILHQYVSTIK ALRSIDPTGV FLEAVGEPIR
101: DYLRGRKDTI KCIVTMLTDG SGGNTSGGNA GDNLLEXSGK DAENQENADY DDQTIIDEKQ AWLNSESWEP DPVEADPLKG SRSRRKIDIL GLMVSIIGSK
201: DQLVNEYRVM LAEKLLSKSD FDIDSDIRTL ELLKIHFGES SMQKCEIMLN DLIDSKRTNS NIKTSLLNAP GTVAGQEEAE ISHDVLDATI ISSNFWPPIQ
301: TEDLAVPASV DKLLSDFAQR FHQIKTPRKL LWKKNLGTVK LELQFEDRSM QFTVVPVHAA IIMRFQEKPS WTSKALATEI GIPVDSLNRR IGFWTSKGVL
401: TESVGPDADD HIFTIVDSMS DVNKNSIVNE SCEAFQMNED EGESSVASVE EQLKKEMTVY EKFIIGMLTN FGNMTLDKIH NTLKMFCTEP SYDKSLQELQ
501: GFLAGLVSDE KLEMRDGLYL LKK
101: DYLRGRKDTI KCIVTMLTDG SGGNTSGGNA GDNLLEXSGK DAENQENADY DDQTIIDEKQ AWLNSESWEP DPVEADPLKG SRSRRKIDIL GLMVSIIGSK
201: DQLVNEYRVM LAEKLLSKSD FDIDSDIRTL ELLKIHFGES SMQKCEIMLN DLIDSKRTNS NIKTSLLNAP GTVAGQEEAE ISHDVLDATI ISSNFWPPIQ
301: TEDLAVPASV DKLLSDFAQR FHQIKTPRKL LWKKNLGTVK LELQFEDRSM QFTVVPVHAA IIMRFQEKPS WTSKALATEI GIPVDSLNRR IGFWTSKGVL
401: TESVGPDADD HIFTIVDSMS DVNKNSIVNE SCEAFQMNED EGESSVASVE EQLKKEMTVY EKFIIGMLTN FGNMTLDKIH NTLKMFCTEP SYDKSLQELQ
501: GFLAGLVSDE KLEMRDGLYL LKK
001: MEALGSSDCN LEILETLSDD AIQEITESYD GFFTTVESLI AGTGDSLVED EFVSHVYCLC KYGLDSLVRD HFLRSLEQAF EKGGASSFWQ HFDAYSEKKH
101: HNYGEEIQIV LCKALEEISI EKQYHEKCLS IVVHALQSFK EQSSDDRQNS DTERVHLFSR FQSMLSSTLM TTLPQHFPEI LHWYFKERLE ELSAIMDGDG
201: IEEQEDDCMD LDEKLRYKNG EMDVDEGCSQ GKRLGHDKLV KNIGKVVRDL RSIGFTSMAE NAYASAIFLL LKAKVHDLAG DDYRTSVLES IKEWIQTVPL
301: QFLNALLSYL GDSVSYGTTS SGLTSPLACC PSPSFSRVVT PSEGIVRWKL RLEYFAYETL QDLRIAKLFE IIVDYPESSP AIEDLKQCLE YTGQHSKLVE
401: SFISSLKYRL LTAGASTNDI LHQYVSTIKA LRAIDPAGVF LEAVGEPIRD YLRGRKDTIK CIVTMLTDGS GGNANGSGNP GDSLLEELMR DEESQENVGF
501: DDDFHTDDKQ AWINASRWEP DPVEADPLKG SLSQRKVDIL GMLVDIIGSK EQLVNEYRVM LAEKLLNKTD YDIDTEIRTV ELLKIHFGEA SMQRCEIMLN
601: DLIDSKRVNT NIKKASQTGA ELRENELSVD TLTSTILSTN FWPPIQDEPL ELPGPVDKLL SDYANRYHEI KTPRKLLWKK NLGTVKLELQ FEDRAMQFTV
701: SPTHAAIIMQ FQEKKSWTYK DLAEVIGIPI DALNRRVNFW ISKGVLREST GANSNSSVLT LVESITDSGK NEGEELLTGE EEGETSIASV EDQLRKEMTI
801: YEKFIMGMLT NFGSMALERI HNTLKMFCVA DPSYDKSLQQ LQSFLSGLVS EEKLEFRDGM YLLKK
101: HNYGEEIQIV LCKALEEISI EKQYHEKCLS IVVHALQSFK EQSSDDRQNS DTERVHLFSR FQSMLSSTLM TTLPQHFPEI LHWYFKERLE ELSAIMDGDG
201: IEEQEDDCMD LDEKLRYKNG EMDVDEGCSQ GKRLGHDKLV KNIGKVVRDL RSIGFTSMAE NAYASAIFLL LKAKVHDLAG DDYRTSVLES IKEWIQTVPL
301: QFLNALLSYL GDSVSYGTTS SGLTSPLACC PSPSFSRVVT PSEGIVRWKL RLEYFAYETL QDLRIAKLFE IIVDYPESSP AIEDLKQCLE YTGQHSKLVE
401: SFISSLKYRL LTAGASTNDI LHQYVSTIKA LRAIDPAGVF LEAVGEPIRD YLRGRKDTIK CIVTMLTDGS GGNANGSGNP GDSLLEELMR DEESQENVGF
501: DDDFHTDDKQ AWINASRWEP DPVEADPLKG SLSQRKVDIL GMLVDIIGSK EQLVNEYRVM LAEKLLNKTD YDIDTEIRTV ELLKIHFGEA SMQRCEIMLN
601: DLIDSKRVNT NIKKASQTGA ELRENELSVD TLTSTILSTN FWPPIQDEPL ELPGPVDKLL SDYANRYHEI KTPRKLLWKK NLGTVKLELQ FEDRAMQFTV
701: SPTHAAIIMQ FQEKKSWTYK DLAEVIGIPI DALNRRVNFW ISKGVLREST GANSNSSVLT LVESITDSGK NEGEELLTGE EEGETSIASV EDQLRKEMTI
801: YEKFIMGMLT NFGSMALERI HNTLKMFCVA DPSYDKSLQQ LQSFLSGLVS EEKLEFRDGM YLLKK
Arabidopsis Description
APC2APC2 [Source:UniProtKB/TrEMBL;Acc:A0A178VYA9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.