Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G273900.1 | Wheat | cytosol | 86.5 | 86.64 |
| TraesCS6A01G251400.1 | Wheat | cytosol | 86.33 | 86.48 |
| TraesCS6D01G233200.1 | Wheat | cytosol | 86.17 | 86.31 |
| Os02t0656300-01 | Rice | cytosol | 81.83 | 82.24 |
| HORVU6Hr1G062870.1 | Barley | cytosol, plastid | 87.83 | 81.2 |
| Zm00001d017475_P002 | Maize | cytosol | 80.33 | 80.47 |
| EES07517 | Sorghum | cytosol | 79.33 | 79.33 |
| Os06t0679100-00 | Rice | plastid | 19.67 | 66.29 |
| VIT_07s0130g00490.t01 | Wine grape | cytosol | 63.17 | 65.68 |
| GSMUA_Achr11P... | Banana | cytosol | 66.0 | 65.56 |
| VIT_07s0031g02330.t01 | Wine grape | cytosol | 62.33 | 64.82 |
| KRH27971 | Soybean | nucleus | 60.83 | 63.26 |
| KRH77487 | Soybean | nucleus | 60.83 | 63.15 |
| Solyc03g113740.2.1 | Tomato | cytosol, mitochondrion | 60.17 | 62.67 |
| PGSC0003DMT400063189 | Potato | cytosol | 56.17 | 61.95 |
| AT3G48150.1 | Thale cress | cytosol | 58.67 | 60.79 |
| Bra033769.1-P | Field mustard | nucleus | 58.17 | 60.38 |
| Bra018081.1-P | Field mustard | cytosol | 58.0 | 60.1 |
| KRH24006 | Soybean | cytosol | 58.17 | 59.25 |
| CDY44976 | Canola | cytosol | 47.67 | 56.63 |
| CDY58070 | Canola | cytosol | 46.67 | 56.57 |
| CDY36901 | Canola | cytosol | 46.17 | 55.29 |
| CDY70805 | Canola | nucleus | 25.5 | 50.83 |
| CDY58069 | Canola | nucleus | 37.0 | 49.78 |
| KRH29310 | Soybean | cytosol | 21.5 | 40.31 |
| HORVU7Hr1G093620.9 | Barley | cytosol | 19.33 | 15.4 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:13.3.4.1.1.2.4 | UniProt:A0A287E9H0 | InterPro:APC8 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005680 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0030071 |
| EnsemblPlantsGene:HORVU0Hr1G027080 | EnsemblPlants:HORVU0Hr1G027080.4 | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 | PFAM:PF04049 |
| PFAM:PF13176 | PFAM:PF13181 | PFAM:PF13414 | PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR12558 |
| PANTHER:PTHR12558:SF10 | SMART:SM00028 | SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat |
| UniParc:UPI000B47F253 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchrUn:-:143561770..143565519
Molecular Weight (calculated)
67129.2 Da
IEP (calculated)
7.729
GRAVY (calculated)
-0.413
Length
600 amino acids
Sequence
(BLAST)
(BLAST)
001: WLPPRRTTAS SSEPPLASSA TVASTPPRNG TPPENPVGPP KVKTLTLTAF SHVQGRRAAR RHRARRGXXX XXXXXXXXXR HGGGGGAAEA GTPLGGVSYV
101: STPIPDDDAF DAGADKYLLA KTYFDCREYR RAAHVLRSQV GRKAVFLRCY ALYMAGEKRK EEETIELEGS LGKSNVVNKE LVALERELST HRRTGAIDSF
201: GLYLYGIVLR DKGCEGMART VLVESVNSYP WNWCAWLEIQ SLCTSSDILN NLNLKNHWMK DFFIASAHLE LKMHEEALKR YERLMGVFHC SDYIQAQIAT
301: VQYSMRDLDE ADMIFEELLR TDPFRVDSMD IYSNLLYAKE SLTALSFLAH RVFLTDKYRP ESCCIIANYY SLKGQHEKSV LYFQRALKLN RKYLSAWTLM
401: GHEFVELKNT PAAIDAYRRA VDINPRDYRA WYGLGQIYEM MGMPFYALYY FRKSSHLQPN DARLWIAMAQ CYESDPLQMI EEAIKCYERA ANTNDTEGIA
501: LHQLAKLHSM LGQAEEAAFY YKKDLERMEV EERQGQNFVE ALLFLARHCK NMGRFEEAEH YCTRLLDYTG PEKETAKSIL QGLKRAQSGF PPMDIDHFAL
101: STPIPDDDAF DAGADKYLLA KTYFDCREYR RAAHVLRSQV GRKAVFLRCY ALYMAGEKRK EEETIELEGS LGKSNVVNKE LVALERELST HRRTGAIDSF
201: GLYLYGIVLR DKGCEGMART VLVESVNSYP WNWCAWLEIQ SLCTSSDILN NLNLKNHWMK DFFIASAHLE LKMHEEALKR YERLMGVFHC SDYIQAQIAT
301: VQYSMRDLDE ADMIFEELLR TDPFRVDSMD IYSNLLYAKE SLTALSFLAH RVFLTDKYRP ESCCIIANYY SLKGQHEKSV LYFQRALKLN RKYLSAWTLM
401: GHEFVELKNT PAAIDAYRRA VDINPRDYRA WYGLGQIYEM MGMPFYALYY FRKSSHLQPN DARLWIAMAQ CYESDPLQMI EEAIKCYERA ANTNDTEGIA
501: LHQLAKLHSM LGQAEEAAFY YKKDLERMEV EERQGQNFVE ALLFLARHCK NMGRFEEAEH YCTRLLDYTG PEKETAKSIL QGLKRAQSGF PPMDIDHFAL
001: MVSKECCRNE IRAAIRQLSD RCLYSAAKWA GEQLVGIEQD PSNFTPANTR FQRGSSSIRR RFSTNESIST PLPSVGFSQA ATPLPEEDEA IDGDIYLLAK
101: SYFDCREYRR ASHMLRDQVS KKSLFLRYYA LYLAGEKRKE EEMIELEGPL GKSDAINREL VSLERDLSAL RRTGAIDSFG LYLYGVVLKE KGNESLARAS
201: LVESVNSYPW NWSAWSELQS LCTSIEILNS LNLNNHWMKE FFLGNAYQEL RMHTESLAKY EYLQGIFSFS NYIQAQTAKA QYSLREFDQV EIMFEELLRN
301: DPYRVEDMDL YSNVLYAKEA CAALSYLAHK VFLTDKYRPE SCCIIGNYYS LKGQHEKAVM YFRRALKLNK KYLSAWTLMG HEYVEMKNTP AAIDAYRRAV
401: DINPTDYRAW YGLGQAYEMM GMPFYALHYF RKSIFFLPND SRLWIAMAKC YQTEQLYMLE EAIKCYKRAV NCTDTEGIAL NQLAKLHQKL GRNEEAAYYF
501: EKDLERMDAE GLEGPNMFEA LVFLATHFKN HKKFEEAEVY CTRLLDYSGP EKEKAKSLLR GIRMAQTGFP SMDLEHFPI
101: SYFDCREYRR ASHMLRDQVS KKSLFLRYYA LYLAGEKRKE EEMIELEGPL GKSDAINREL VSLERDLSAL RRTGAIDSFG LYLYGVVLKE KGNESLARAS
201: LVESVNSYPW NWSAWSELQS LCTSIEILNS LNLNNHWMKE FFLGNAYQEL RMHTESLAKY EYLQGIFSFS NYIQAQTAKA QYSLREFDQV EIMFEELLRN
301: DPYRVEDMDL YSNVLYAKEA CAALSYLAHK VFLTDKYRPE SCCIIGNYYS LKGQHEKAVM YFRRALKLNK KYLSAWTLMG HEYVEMKNTP AAIDAYRRAV
401: DINPTDYRAW YGLGQAYEMM GMPFYALHYF RKSIFFLPND SRLWIAMAKC YQTEQLYMLE EAIKCYKRAV NCTDTEGIAL NQLAKLHQKL GRNEEAAYYF
501: EKDLERMDAE GLEGPNMFEA LVFLATHFKN HKKFEEAEVY CTRLLDYSGP EKEKAKSLLR GIRMAQTGFP SMDLEHFPI
Arabidopsis Description
APC8Anaphase-promoting complex subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9STS3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.