Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G054930.3 | |
| HORVU6Hr1G066640.4 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G17880.1 | HORVU1Hr1G054930.3 | AT4G17680.1 | 21798944 |
| AT2G17880.1 | HORVU6Hr1G066640.4 | AT4G17680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G226300.1 | Wheat | plastid | 70.52 | 74.39 |
| TraesCS4A01G069100.1 | Wheat | plastid | 69.36 | 72.29 |
| TraesCS4D01G226900.1 | Wheat | plastid | 61.85 | 63.31 |
| Zm00001d028404_P001 | Maize | plastid | 43.93 | 49.35 |
| TraesCS4B01G226200.1 | Wheat | plastid | 50.87 | 49.16 |
| Os03t0244950-00 | Rice | mitochondrion, nucleus, plastid | 47.98 | 48.54 |
| KRH69778 | Soybean | mitochondrion | 26.59 | 45.1 |
| HORVU7Hr1G116960.1 | Barley | plastid | 34.68 | 44.12 |
| GSMUA_Achr1P02450_001 | Banana | plastid | 36.99 | 43.24 |
| EER92566 | Sorghum | plastid | 39.31 | 42.77 |
| HORVU7Hr1G116890.2 | Barley | plastid | 34.1 | 42.14 |
| HORVU7Hr1G057330.1 | Barley | plastid | 32.37 | 39.72 |
| GSMUA_Achr8P19450_001 | Banana | plastid | 37.57 | 36.93 |
| GSMUA_Achr5P18850_001 | Banana | plastid | 35.84 | 36.26 |
| GSMUA_Achr5P11400_001 | Banana | plastid | 31.79 | 35.71 |
| KRH76655 | Soybean | plastid | 32.37 | 35.44 |
| KRH28802 | Soybean | plastid | 32.37 | 35.44 |
| PGSC0003DMT400061357 | Potato | plastid | 30.06 | 33.99 |
| CDY07811 | Canola | plastid | 31.21 | 33.33 |
| KRH08066 | Soybean | plastid | 30.06 | 33.12 |
| KRH38394 | Soybean | plastid | 26.59 | 33.09 |
| CDY29205 | Canola | plastid | 30.06 | 32.7 |
| AT2G17880.1 | Thale cress | plastid | 30.06 | 32.5 |
| AT4G36040.1 | Thale cress | plastid | 30.06 | 32.3 |
| CDX72573 | Canola | plastid | 30.06 | 32.3 |
| CDY26834 | Canola | plastid | 29.48 | 32.28 |
| Bra011656.1-P | Field mustard | plastid | 29.48 | 32.08 |
| Bra040872.1-P | Field mustard | plastid | 29.48 | 32.08 |
| CDX75547 | Canola | plastid | 29.48 | 31.88 |
| KRG99625 | Soybean | plastid | 24.28 | 31.82 |
| CDY24828 | Canola | plastid | 29.48 | 31.68 |
| Bra010502.1-P | Field mustard | plastid | 29.48 | 31.68 |
| Bra017744.1-P | Field mustard | plastid | 29.48 | 31.68 |
| CDX69193 | Canola | plastid | 29.48 | 31.48 |
| CDY30342 | Canola | plastid | 27.75 | 31.17 |
| KRH20682 | Soybean | plastid | 24.86 | 31.16 |
| VIT_03s0038g02110.t01 | Wine grape | cytosol, nucleus, plastid | 27.17 | 31.13 |
| Bra037247.1-P | Field mustard | plastid | 27.17 | 30.52 |
| CDY34072 | Canola | plastid | 28.32 | 30.43 |
| Solyc02g062160.1.1 | Tomato | plastid | 26.59 | 29.87 |
| HORVU7Hr1G045280.1 | Barley | plastid | 19.08 | 29.73 |
| KRH50148 | Soybean | plastid | 23.7 | 29.08 |
| PGSC0003DMT400009189 | Potato | plastid | 22.54 | 27.27 |
| KRH08065 | Soybean | plastid | 25.43 | 26.67 |
| VIT_04s0023g03470.t01 | Wine grape | cytosol, plastid | 28.9 | 24.88 |
| KRH69779 | Soybean | mitochondrion | 25.43 | 21.57 |
Protein Annotations
| EMBL:AK362103 | EMBL:AK363957 | EnsemblPlants:HORVU4Hr1G063590.1 | EnsemblPlantsGene:HORVU4Hr1G063590 | Gene3D:1.10.287.110 | InterPro:DnaJ_domain |
| InterPro:DnaJ_domain_CS | InterPro:IPR001623 | InterPro:IPR036869 | InterPro:J_dom_sf | PANTHER:PTHR44240 | PANTHER:PTHR44240:SF4 |
| PFAM:PF00226 | PFscan:PS50076 | PRINTS:PR00625 | ScanProsite:PS00636 | SEG:seg | SMART:SM00271 |
| SUPFAM:SSF46565 | UniParc:UPI00020060CD | UniProt:F2DDY6 | MapMan:35.2 | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DDY6]
Coordinates
chrchr4H:-:531748388..531749785
Molecular Weight (calculated)
18579.8 Da
IEP (calculated)
11.178
GRAVY (calculated)
-0.349
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MISPRPTLSS GFFSRSASFS RPASFSPRPM SPPASPAAQA PPPLLSAPFA RPTTFSRSAS FSASAVAAPD RGASPCFYDV LGLDAGASGG EIKAAYRRLA
101: RAVHPDVSPH PADDFIRVHA AYSTLSDPSK RADYDRRMII IPSAISRRSA PNLARSPSFP GCRRRTWETD QCW
101: RAVHPDVSPH PADDFIRVHA AYSTLSDPSK RADYDRRMII IPSAISRRSA PNLARSPSFP GCRRRTWETD QCW
001: MLSSSPTFFA TPFLSSSSSS SPSFSSTSPP SRISRISPSL STTTASYTCA EDLPRLRQIP QRFSATASLY EILEIPVGST SQEIKSAYRR LARICHPDVA
101: RNSRDNSSAD DFMKIHAAYC TLSDPEKRAV YDRRTLLRSR PLTAGYGSYG GRNWETDQCW
101: RNSRDNSSAD DFMKIHAAYC TLSDPEKRAV YDRRTLLRSR PLTAGYGSYG GRNWETDQCW
Arabidopsis Description
At2g17880 [Source:UniProtKB/TrEMBL;Acc:O48828]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.