Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- mitochondrion 2
- golgi 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0687500-01 | |
| Os10t0565500-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G17880.1 | Os02t0687500-01 | AT4G17680.1 | 21798944 |
| AT2G17880.1 | Os10t0565500-01 | AT4G17680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d028404_P001 | Maize | plastid | 50.29 | 55.84 |
| EER92566 | Sorghum | plastid | 51.46 | 55.35 |
| TraesCS4A01G069100.1 | Wheat | plastid | 48.54 | 50.0 |
| HORVU4Hr1G063590.1 | Barley | plastid | 48.54 | 47.98 |
| TraesCS4B01G226300.1 | Wheat | plastid | 45.61 | 47.56 |
| TraesCS4D01G226900.1 | Wheat | plastid | 46.78 | 47.34 |
| KRH69778 | Soybean | mitochondrion | 26.9 | 45.1 |
| GSMUA_Achr1P02450_001 | Banana | plastid | 37.43 | 43.24 |
| Os06t0716100-01 | Rice | plastid | 32.75 | 42.11 |
| TraesCS4B01G226200.1 | Wheat | plastid | 43.86 | 41.9 |
| Os08t0548400-00 | Rice | plastid | 34.5 | 40.41 |
| CDX69193 | Canola | plastid | 35.09 | 37.04 |
| CDY30342 | Canola | plastid | 32.75 | 36.36 |
| Bra037247.1-P | Field mustard | plastid | 32.16 | 35.71 |
| GSMUA_Achr5P11400_001 | Banana | plastid | 32.16 | 35.71 |
| AT2G17880.1 | Thale cress | plastid | 33.33 | 35.62 |
| KRG99625 | Soybean | plastid | 27.49 | 35.61 |
| CDY34072 | Canola | plastid | 33.33 | 35.4 |
| CDX72573 | Canola | plastid | 33.33 | 35.4 |
| Bra010502.1-P | Field mustard | plastid | 33.33 | 35.4 |
| CDY24828 | Canola | plastid | 33.33 | 35.4 |
| AT4G36040.1 | Thale cress | plastid | 33.33 | 35.4 |
| PGSC0003DMT400061357 | Potato | plastid | 31.58 | 35.29 |
| CDX75547 | Canola | plastid | 32.75 | 35.0 |
| CDY26834 | Canola | plastid | 32.16 | 34.81 |
| KRH28802 | Soybean | plastid | 32.16 | 34.81 |
| KRH76655 | Soybean | plastid | 32.16 | 34.81 |
| Bra017744.1-P | Field mustard | plastid | 32.75 | 34.78 |
| Bra011656.1-P | Field mustard | plastid | 32.16 | 34.59 |
| GSMUA_Achr5P18850_001 | Banana | plastid | 34.5 | 34.5 |
| KRH38394 | Soybean | plastid | 27.49 | 33.81 |
| CDY07811 | Canola | plastid | 31.58 | 33.33 |
| Bra040872.1-P | Field mustard | plastid | 30.41 | 32.7 |
| CDY29205 | Canola | plastid | 30.41 | 32.7 |
| KRH08066 | Soybean | plastid | 29.82 | 32.48 |
| Solyc02g062160.1.1 | Tomato | plastid | 29.24 | 32.47 |
| VIT_03s0038g02110.t01 | Wine grape | cytosol, nucleus, plastid | 28.66 | 32.45 |
| GSMUA_Achr8P19450_001 | Banana | plastid | 33.33 | 32.39 |
| KRH20682 | Soybean | plastid | 24.56 | 30.43 |
| KRH50148 | Soybean | plastid | 23.39 | 28.37 |
| PGSC0003DMT400009189 | Potato | plastid | 22.81 | 27.27 |
| KRH08065 | Soybean | plastid | 26.32 | 27.27 |
| VIT_04s0023g03470.t01 | Wine grape | cytosol, plastid | 30.41 | 25.87 |
| KRH69779 | Soybean | mitochondrion | 26.32 | 22.06 |
Protein Annotations
| Gene3D:1.10.287.110 | MapMan:35.2 | UniProt:A0A0P0VVB5 | ProteinID:BAS83231.1 | InterPro:DnaJ_domain | InterPro:DnaJ_domain_CS |
| InterPro:IPR001623 | InterPro:IPR036869 | InterPro:J_dom_sf | EnsemblPlantsGene:Os03g0244950 | EnsemblPlants:Os03t0244950-00 | PFAM:PF00226 |
| PRINTS:PR00625 | ScanProsite:PS00636 | PFscan:PS50076 | PANTHER:PTHR44240 | PANTHER:PTHR44240:SF4 | SMART:SM00271 |
| SUPFAM:SSF46565 | UniParc:UPI000393A057 | SEG:seg | : | : | : |
Description
Heat shock protein DnaJ, N-terminal domain containing protein. (Os03t0244950-00)
Coordinates
chr3:-:7669855..7670370
Molecular Weight (calculated)
18271.4 Da
IEP (calculated)
11.428
GRAVY (calculated)
-0.411
Length
171 amino acids
Sequence
(BLAST)
(BLAST)
001: PRQAATMISP RPALSSSSFL AFRPAAASPT TNPSPPPSPR LHAAPPPLSA SFSPSTSVVA PDHVAAAAAA SFYDVLGLHA GASAREIKDA YRRLARAVHP
101: DASPHPAAAS SDDFIRVHAA YSTLSDPDKR ADYDRRLLLL AAGRRRATPS LGRSPTFPAR RRRTWETDQC W
101: DASPHPAAAS SDDFIRVHAA YSTLSDPDKR ADYDRRLLLL AAGRRRATPS LGRSPTFPAR RRRTWETDQC W
001: MLSSSPTSFT HPFLSSSPPL SPISPPSRTA RISPPLVSAS CSYTYTEDSP RLHQIPRRLT TVPASLYDVL EVPLGATSQD IKSAYRRLAR ICHPDVAGTD
101: RTSSSSADEF MKIHAAYCTL SDPEKRSVYD RRMLRRSRPL TVGTSGLGSY VGRNWETDQC W
101: RTSSSSADEF MKIHAAYCTL SDPEKRSVYD RRMLRRSRPL TVGTSGLGSY VGRNWETDQC W
Arabidopsis Description
ATJ11At4g36040 [Source:UniProtKB/TrEMBL;Acc:Q1H544]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.