CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75547	Canola	plastid	90.12	91.25
Bra011656.1-P	Field mustard	plastid	88.27	89.94
AT4G36040.1	Thale cress	plastid	83.95	84.47
CDX72573	Canola	plastid	79.63	80.12
CDY24828	Canola	plastid	78.4	78.88
CDY34072	Canola	plastid	77.16	77.64
CDY29205	Canola	plastid	64.2	65.41
CDY26834	Canola	plastid	63.58	65.19
CDY07811	Canola	plastid	64.81	64.81
CDY30342	Canola	plastid	61.11	64.29
KRH69778	Soybean	mitochondrion	37.65	59.8
CDY44009	Canola	cytosol	14.2	42.59
GSMUA_Achr3P12640_001	Banana	plastid	34.57	42.11
KRH76655	Soybean	plastid	40.12	41.14
KRH28802	Soybean	plastid	40.12	41.14
Solyc02g062160.1.1	Tomato	plastid	38.27	40.26
GSMUA_Achr1P18570_001	Banana	mitochondrion	33.95	39.29
Zm00001d053213_P001	Maize	mitochondrion, plastid	33.33	38.57
KRH08066	Soybean	plastid	35.8	36.94
HORVU7Hr1G057330.1	Barley	plastid	32.1	36.88
GSMUA_Achr5P11400_001	Banana	plastid	34.57	36.36
TraesCS7A01G271600.1	Wheat	plastid	31.48	36.17
PGSC0003DMT400061357	Potato	plastid	33.95	35.95
VIT_03s0038g02110.t01	Wine grape	cytosol, nucleus, plastid	33.33	35.76
GSMUA_Achr5P18850_001	Banana	plastid	37.65	35.67
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	32.1	35.62
KRG99625	Soybean	plastid	29.01	35.61
TraesCS7B01G445600.1	Wheat	plastid	30.25	35.51
TraesCS7D01G271900.1	Wheat	plastid	30.86	35.46
Zm00001d014790_P001	Maize	plastid	28.4	35.38
TraesCS4B01G226300.1	Wheat	plastid	35.8	35.37
KRH38394	Soybean	plastid	30.25	35.25
GSMUA_Achr1P02450_001	Banana	plastid	32.1	35.14
Os03t0244950-00	Rice	mitochondrion, nucleus, plastid	37.04	35.09
Zm00001d028404_P001	Maize	plastid	33.33	35.06
TraesCS7A01G529200.1	Wheat	plastid	30.25	35.0
PGSC0003DMT400009189	Potato	plastid	30.86	34.97
VIT_04s0023g03470.t01	Wine grape	cytosol, plastid	43.21	34.83
TraesCS7B01G170400.1	Wheat	plastid	30.25	34.75
TraesCS7A01G528700.1	Wheat	plastid	29.63	34.29
EER92566	Sorghum	plastid	33.33	33.96
Os06t0716100-01	Rice	plastid	27.78	33.83
TraesCS7D01G516600.1	Wheat	plastid	29.01	33.81
TraesCS7B01G445500.1	Wheat	plastid	29.01	33.81
TraesCS4D01G226900.1	Wheat	plastid	35.19	33.73
TraesCS7D01G516700.1	Wheat	plastid	29.01	33.57
KXG25435	Sorghum	plastid	30.86	33.56
TraesCS7B01G448500.1	Wheat	plastid	26.54	33.33
KRH08065	Soybean	plastid	33.95	33.33
HORVU7Hr1G116960.1	Barley	plastid	27.78	33.09
TraesCS7B01G445800.1	Wheat	plastid	28.4	32.86
TraesCS7D01G516800.1	Wheat	plastid	28.4	32.86
HORVU7Hr1G116890.2	Barley	plastid	28.4	32.86
Zm00001d032030_P001	Maize	plastid	27.78	32.61
TraesCS7B01G446100.1	Wheat	mitochondrion, plastid	25.93	32.56
TraesCS4B01G226200.1	Wheat	plastid	35.8	32.4
TraesCS7B01G445700.1	Wheat	plastid	27.78	32.37
TraesCS7A01G528800.1	Wheat	plastid	27.16	32.35
TraesCS7A01G529400.1	Wheat	plastid	25.93	32.31
TraesCS7D01G517000.1	Wheat	plastid	27.78	32.14
TraesCS7B01G446000.1	Wheat	plastid	25.31	31.78
TraesCS7A01G528900.1	Wheat	plastid	27.16	31.65
TraesCS7A01G529000.1	Wheat	plastid	27.16	31.65
TraesCS4A01G069100.1	Wheat	plastid	32.1	31.33
GSMUA_Achr8P19450_001	Banana	plastid	33.95	31.25
KRH20682	Soybean	plastid	26.54	31.16
TraesCS7D01G516900.1	Wheat	plastid	26.54	30.94
Os08t0548400-00	Rice	plastid	27.78	30.82
CDY43357	Canola	plastid	30.25	30.82
KRH50148	Soybean	plastid	26.54	30.5
TraesCS3D01G308300.1	Wheat	plastid	25.31	29.93
CDX75702	Canola	plastid	29.63	29.81
CDY23588	Canola	plastid	29.63	29.81
CDX82546	Canola	plastid	29.01	29.75
CDY24196	Canola	plastid	29.01	29.56
HORVU4Hr1G063590.1	Barley	plastid	31.48	29.48
EER88964	Sorghum	plastid	24.69	29.2
TraesCS7B01G445900.1	Wheat	mitochondrion, plastid	22.84	24.18
KRH69779	Soybean	mitochondrion	30.25	24.02

Protein Annotations

EnsemblPlants:CDX69193	EnsemblPlantsGene:GSBRNA2T00130991001	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:IPR001623	InterPro:IPR036869
InterPro:J_dom_sf	PANTHER:PTHR44240	PANTHER:PTHR44240:SF1	PFAM:PF00226	PFscan:PS50076	PRINTS:PR00625
ProteinID:CDX69193	ProteinID:CDX69193.1	SEG:seg	SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI0004EDB6AE
MapMan:35.1	:	:	:	:	:

Description

BnaC01g02600D

Coordinates

chrLK031789:-:3385069..3385557

Molecular Weight (calculated)

17769.9 Da

IEP (calculated)

8.737

GRAVY (calculated)

-0.425

Length

162 amino acids

Sequence
(BLAST)

001: MLSSSSPTSF AHPFLSSSSP PLSPVSPPSR SARISPPLVS ASCSYTCTED TPRLHQIPLR STTAATASLY ELLEVPLGAT SQDIKSAYRR LARICHPDVA
101: GTDRTTSADE FMKIHAAYCT LSDPEKRSVY DRRMLRRSRP LTVGNSGMGS YVGRNWETDQ CW

Best Arabidopsis Sequence Match ( AT4G36040.1 )
(BLAST)

001: MLSSSPTSFT HPFLSSSPPL SPISPPSRTA RISPPLVSAS CSYTYTEDSP RLHQIPRRLT TVPASLYDVL EVPLGATSQD IKSAYRRLAR ICHPDVAGTD
101: RTSSSSADEF MKIHAAYCTL SDPEKRSVYD RRMLRRSRPL TVGTSGLGSY VGRNWETDQC W

Arabidopsis Description

ATJ11At4g36040 [Source:UniProtKB/TrEMBL;Acc:Q1H544]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.