CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY08148

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13310.1	CDY08148	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44009	Canola	cytosol	30.19	88.89
CDY43357	Canola	plastid	79.87	79.87
CDX82546	Canola	plastid	71.07	71.52
CDX75702	Canola	plastid	71.07	70.19
AT3G13310.1	Thale cress	plastid	61.64	62.42
CDY23588	Canola	plastid	62.89	62.11
EER89648	Sorghum	plastid	30.82	47.57
TraesCS7B01G127100.1	Wheat	cytosol, mitochondrion	28.93	46.46
HORVU7Hr1G045280.1	Barley	plastid	30.82	44.14
TraesCS7D01G221800.1	Wheat	plastid	30.19	44.04
VIT_19s0015g01370.t01	Wine grape	plastid	39.62	42.57
TraesCS7A01G220300.1	Wheat	plastid	28.93	42.2
Solyc07g065960.1.1	Tomato	plastid	41.51	40.99
KRH14184	Soybean	mitochondrion, plastid	36.48	40.85
PGSC0003DMT400056986	Potato	plastid	40.25	39.75
GSMUA_Achr9P19770_001	Banana	plastid	31.45	39.37
KRG98415	Soybean	plastid	35.85	37.75
Solyc07g065970.1.1	Tomato	mitochondrion	37.74	36.59
PGSC0003DMT400056985	Potato	plastid	37.11	35.98
GSMUA_Achr4P01700_001	Banana	plastid	27.67	34.11
KRH46491	Soybean	plastid	32.7	33.33
CDY34072	Canola	plastid	30.19	29.81
CDX72573	Canola	plastid	30.19	29.81
CDY24828	Canola	plastid	30.19	29.81
CDX69193	Canola	plastid	29.56	29.01
CDY29205	Canola	plastid	28.93	28.93
CDX75547	Canola	plastid	28.93	28.75
CDY30342	Canola	plastid	27.67	28.57
CDY26834	Canola	plastid	28.3	28.48
CDY07811	Canola	plastid	28.3	27.78

Protein Annotations

Gene3D:1.10.287.110	MapMan:35.2	UniProt:A0A078GFQ0	EnsemblPlants:CDY24196	ProteinID:CDY24196	ProteinID:CDY24196.1
InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	EnsemblPlantsGene:GSBRNA2T00026295001	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf
PFAM:PF00226	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR44240	PANTHER:PTHR44240:SF5
SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI0004EF4712	:	:	:

Description

BnaC01g37760DBnaC01g37760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFQ0]

Coordinates

chrLK032155:+:205485..206221

Molecular Weight (calculated)

17500.5 Da

IEP (calculated)

10.482

GRAVY (calculated)

-0.613

Length

159 amino acids

Sequence
(BLAST)

001: MSGILVNCAG NSLRFSPGTS LPQPKSTRSH NGTARFPTGA NSFRASAQTL NAEPAVTESV RRRASSLYEL LKVNETASLP EIKTAYRSLA KVYHPDASES
101: DGRDFMEIHK AYATLADPTT RAIYDSTLGA RRRRVQVGAM GRAGRAYSTT RRWETDQCW

Best Arabidopsis Sequence Match ( AT3G13310.1 )
(BLAST)

001: MAGTLVNSAG RFSPGNCILP QQRTARFYSG TARFPTGAPS FKASAQTLNA EPAVTESVRR RVSSLYELLK VNETASLTEI KTAYRSLAKV YHPDASESDG
101: RDFMEIHKAY ATLADPTTRA IYDSTLRVPR RRVHAGAMGR SGRVYATTRR WETDQCW

Arabidopsis Description

At3g13310 [Source:UniProtKB/TrEMBL;Acc:Q9LTT7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.