Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY08148 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G13310.1 | CDY08148 | AT3G49580.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY23588 | Canola | plastid | 100.0 | 33.54 |
| Bra034691.1-P | Field mustard | plastid | 98.15 | 33.33 |
| AT3G13310.1 | Thale cress | plastid | 90.74 | 31.21 |
| CDY43357 | Canola | plastid | 90.74 | 30.82 |
| CDY24196 | Canola | plastid | 88.89 | 30.19 |
| CDX82546 | Canola | plastid | 83.33 | 28.48 |
| CDX75702 | Canola | plastid | 83.33 | 27.95 |
| TraesCS7B01G127100.1 | Wheat | cytosol, mitochondrion | 42.59 | 23.23 |
| HORVU7Hr1G045280.1 | Barley | plastid | 46.3 | 22.52 |
| EER89648 | Sorghum | plastid | 42.59 | 22.33 |
| TraesCS7A01G220300.1 | Wheat | plastid | 44.44 | 22.02 |
| TraesCS7D01G221800.1 | Wheat | plastid | 42.59 | 21.1 |
| VIT_19s0015g01370.t01 | Wine grape | plastid | 50.0 | 18.24 |
| GSMUA_Achr4P01700_001 | Banana | plastid | 42.59 | 17.83 |
| KRH14184 | Soybean | mitochondrion, plastid | 46.3 | 17.61 |
| Solyc07g065960.1.1 | Tomato | plastid | 51.85 | 17.39 |
| PGSC0003DMT400056986 | Potato | plastid | 51.85 | 17.39 |
| Solyc07g065970.1.1 | Tomato | mitochondrion | 51.85 | 17.07 |
| PGSC0003DMT400056985 | Potato | plastid | 51.85 | 17.07 |
| KRG98415 | Soybean | plastid | 46.3 | 16.56 |
| KRH46491 | Soybean | plastid | 46.3 | 16.03 |
| GSMUA_Achr9P19770_001 | Banana | plastid | 37.04 | 15.75 |
| CDY29205 | Canola | plastid | 42.59 | 14.47 |
| CDX75547 | Canola | plastid | 42.59 | 14.38 |
| CDY30342 | Canola | plastid | 40.74 | 14.29 |
| CDX69193 | Canola | plastid | 42.59 | 14.2 |
| CDY07811 | Canola | plastid | 42.59 | 14.2 |
| CDY26834 | Canola | plastid | 40.74 | 13.92 |
| CDY24828 | Canola | plastid | 40.74 | 13.66 |
| CDX72573 | Canola | plastid | 40.74 | 13.66 |
| CDY34072 | Canola | plastid | 38.89 | 13.04 |
Protein Annotations
| EnsemblPlants:CDY44009 | EnsemblPlantsGene:GSBRNA2T00079410001 | PANTHER:PTHR44240 | PANTHER:PTHR44240:SF5 | ProteinID:CDY44009 | ProteinID:CDY44009.1 |
| UniParc:UPI0004EF1871 | UniProt:A0A078I355 | MapMan:35.2 | : | : | : |
Description
BnaA05g26040DBnaA05g26040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I355]
Coordinates
chrLK032576:+:166037..166392
Molecular Weight (calculated)
6298.5 Da
IEP (calculated)
10.716
GRAVY (calculated)
-0.728
Length
54 amino acids
Sequence
(BLAST)
(BLAST)
1: MEIHKAYATL ADPTTRAIYD STLVTRRRRV HAGAMGRAGR VYTTTRRWET DQCW
001: MAGTLVNSAG RFSPGNCILP QQRTARFYSG TARFPTGAPS FKASAQTLNA EPAVTESVRR RVSSLYELLK VNETASLTEI KTAYRSLAKV YHPDASESDG
101: RDFMEIHKAY ATLADPTTRA IYDSTLRVPR RRVHAGAMGR SGRVYATTRR WETDQCW
101: RDFMEIHKAY ATLADPTTRA IYDSTLRVPR RRVHAGAMGR SGRVYATTRR WETDQCW
Arabidopsis Description
At3g13310 [Source:UniProtKB/TrEMBL;Acc:Q9LTT7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.