CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY08148

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13310.1	CDY08148	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44009	Canola	cytosol	33.54	100.0
CDX82546	Canola	plastid	68.94	70.25
CDX75702	Canola	plastid	69.57	69.57
Bra034691.1-P	Field mustard	plastid	64.6	65.41
AT3G13310.1	Thale cress	plastid	63.35	64.97
CDY24196	Canola	plastid	62.11	62.89
CDY43357	Canola	plastid	60.25	61.01
TraesCS7A01G220300.1	Wheat	plastid	31.06	45.87
TraesCS7B01G127100.1	Wheat	cytosol, mitochondrion	27.95	45.45
VIT_19s0015g01370.t01	Wine grape	plastid	40.37	43.92
EER89648	Sorghum	plastid	27.95	43.69
HORVU7Hr1G045280.1	Barley	plastid	29.19	42.34
TraesCS7D01G221800.1	Wheat	plastid	27.95	41.28
KRG98415	Soybean	plastid	38.51	41.06
KRH14184	Soybean	mitochondrion, plastid	35.4	40.14
GSMUA_Achr9P19770_001	Banana	plastid	31.06	39.37
GSMUA_Achr4P01700_001	Banana	plastid	31.06	38.76
PGSC0003DMT400056986	Potato	plastid	38.51	38.51
Solyc07g065960.1.1	Tomato	plastid	37.89	37.89
Solyc07g065970.1.1	Tomato	mitochondrion	37.27	36.59
KRH46491	Soybean	plastid	34.78	35.9
PGSC0003DMT400056985	Potato	plastid	34.78	34.15
CDX72573	Canola	plastid	30.43	30.43
CDX75547	Canola	plastid	29.81	30.0
CDX69193	Canola	plastid	29.81	29.63
CDY30342	Canola	plastid	27.95	29.22
CDY26834	Canola	plastid	27.95	28.48
CDY34072	Canola	plastid	27.95	27.95
CDY24828	Canola	plastid	27.95	27.95
CDY29205	Canola	plastid	27.33	27.67
CDY07811	Canola	plastid	27.33	27.16

Protein Annotations

EnsemblPlants:CDY23588	EnsemblPlantsGene:GSBRNA2T00023790001	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR44240	PANTHER:PTHR44240:SF5	PFAM:PF00226	PFscan:PS50076
PRINTS:PR00625	ProteinID:CDY23588	ProteinID:CDY23588.1	ScanProsite:PS00636	SMART:SM00271	SUPFAM:SSF46565
UniParc:UPI0004EB14FD	UniProt:A0A078GG80	MapMan:35.2	:	:	:

Description

BnaC05g40060DBnaC05g40060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GG80]

Coordinates

chrLK032145:-:218075..219030

Molecular Weight (calculated)

17906.0 Da

IEP (calculated)

10.379

GRAVY (calculated)

-0.554

Length

161 amino acids

Sequence
(BLAST)

001: MSGILVYSAA SSLRLSPGNS FLESKKTVGS RNGNARFPSG ATSVRAYTQQ TFNAEPAVTE SVRRRASSLY ELLKVNETAS LTEIKTAYRS LAKVYHPDAS
101: ESDGRDFMEI HKAYATLADP TTRAIYDSTL VTRRRRVHAG AMGRAGRVYT TTRRWETDQC W

Best Arabidopsis Sequence Match ( AT3G13310.1 )
(BLAST)

001: MAGTLVNSAG RFSPGNCILP QQRTARFYSG TARFPTGAPS FKASAQTLNA EPAVTESVRR RVSSLYELLK VNETASLTEI KTAYRSLAKV YHPDASESDG
101: RDFMEIHKAY ATLADPTTRA IYDSTLRVPR RRVHAGAMGR SGRVYATTRR WETDQCW

Arabidopsis Description

At3g13310 [Source:UniProtKB/TrEMBL;Acc:Q9LTT7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.