Factsheet for PGSC0003DMT400056985

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2
mitochondrion 2
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001474
PGSC0003DMT400001475
PGSC0003DMT400001476
PGSC0003DMT400069515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13310.1	PGSC0003DMT400001474	AT3G49580.1	21798944
AT3G13310.1	PGSC0003DMT400001475	AT3G49580.1	21798944
AT3G13310.1	PGSC0003DMT400001476	AT3G49580.1	21798944
AT3G13310.1	PGSC0003DMT400069515	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g065970.1.1	Tomato	mitochondrion	84.15	84.15
CDY44009	Canola	cytosol	17.07	51.85
KRH14184	Soybean	mitochondrion, plastid	39.02	45.07
PGSC0003DMT400056986	Potato	plastid	43.29	44.1
EER89648	Sorghum	plastid	27.44	43.69
TraesCS7B01G127100.1	Wheat	cytosol, mitochondrion	25.61	42.42
KRG98415	Soybean	plastid	39.02	42.38
VIT_19s0015g01370.t01	Wine grape	plastid	37.2	41.22
TraesCS7A01G220300.1	Wheat	plastid	26.83	40.37
HORVU7Hr1G045280.1	Barley	plastid	26.83	39.64
TraesCS7D01G221800.1	Wheat	plastid	26.22	39.45
CDY43357	Canola	plastid	37.8	38.99
GSMUA_Achr4P01700_001	Banana	plastid	30.49	38.76
AT3G13310.1	Thale cress	plastid	35.98	37.58
KRH46491	Soybean	plastid	35.37	37.18
CDY24196	Canola	plastid	35.98	37.11
Bra039384.1-P	Field mustard	plastid	35.37	36.94
CDX82546	Canola	plastid	35.37	36.71
Bra001497.1-P	Field mustard	plastid	35.37	36.71
CDX75702	Canola	plastid	35.98	36.65
Bra034691.1-P	Field mustard	plastid	35.37	36.48
GSMUA_Achr9P19770_001	Banana	plastid	27.44	35.43
CDY23588	Canola	plastid	34.15	34.78
PGSC0003DMT400025543	Potato	plastid	28.05	29.49
PGSC0003DMT400061357	Potato	plastid	26.83	28.76
PGSC0003DMT400009189	Potato	plastid	20.12	23.08

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:102599037	MapMan:35.1	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	UniProt:M1C063	PFAM:PF00226	EnsemblPlantsGene:PGSC0003DMG400022151	PGSC:PGSC0003DMG400022151
EnsemblPlants:PGSC0003DMT400056985	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR44240	PANTHER:PTHR44240:SF5
SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI000296A55A	RefSeq:XP_006346095.1	SEG:seg	:

Description

Chaperone protein DNAj [Source:PGSC_GENE;Acc:PGSC0003DMG400022151]

Coordinates

chr7:-:55952266..55953030

Molecular Weight (calculated)

18007.0 Da

IEP (calculated)

9.353

GRAVY (calculated)

-0.502

Length

164 amino acids

Sequence
(BLAST)

001: MVQSLTLPAG NTFRFSLHSP PSSTAGFRSG VTFPRRNNGT AAVYAAAVAE APPVLRRKTP ASLYDVLRVK SNASAKEIKS AYRNLAKLYH PDAASLSEES
101: SDGQHFIEIH EAYATLSDPV SRDLYDLKLN MSSGRQGFGS SGDGIRMNGS EFYPTRRWET DQCW

Best Arabidopsis Sequence Match ( AT3G13310.1 )
(BLAST)

001: MAGTLVNSAG RFSPGNCILP QQRTARFYSG TARFPTGAPS FKASAQTLNA EPAVTESVRR RVSSLYELLK VNETASLTEI KTAYRSLAKV YHPDASESDG
101: RDFMEIHKAY ATLADPTTRA IYDSTLRVPR RRVHAGAMGR SGRVYATTRR WETDQCW

Arabidopsis Description

At3g13310 [Source:UniProtKB/TrEMBL;Acc:Q9LTT7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.