Factsheet for PGSC0003DMT400009189

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2
mitochondrion 1
golgi 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400004642
PGSC0003DMT400052841
PGSC0003DMT400068387

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17880.1	PGSC0003DMT400004642	AT4G17680.1	21798944
AT2G17880.1	PGSC0003DMT400052841	AT4G17680.1	21798944
AT2G17880.1	PGSC0003DMT400068387	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69778	Soybean	mitochondrion	27.97	39.22
KRH50148	Soybean	plastid	37.76	38.3
KRG99625	Soybean	plastid	32.87	35.61
PGSC0003DMT400061357	Potato	plastid	37.76	35.29
CDY29205	Canola	plastid	37.76	33.96
CDX72573	Canola	plastid	37.06	32.92
CDX75547	Canola	plastid	36.36	32.5
AT2G17880.1	Thale cress	plastid	36.36	32.5
Bra017744.1-P	Field mustard	plastid	35.66	31.68
GSMUA_Achr1P18570_001	Banana	mitochondrion	30.77	31.43
CDY30342	Canola	plastid	33.57	31.17
CDY26834	Canola	plastid	34.27	31.01
KRH38394	Soybean	plastid	30.07	30.94
CDX69193	Canola	plastid	34.97	30.86
CDY07811	Canola	plastid	34.97	30.86
KRH20682	Soybean	plastid	29.37	30.43
GSMUA_Achr5P18850_001	Banana	plastid	36.36	30.41
KRH28802	Soybean	plastid	33.57	30.38
Bra011656.1-P	Field mustard	plastid	33.57	30.19
GSMUA_Achr3P12640_001	Banana	plastid	27.97	30.08
VIT_04s0023g03470.t01	Wine grape	cytosol, plastid	41.96	29.85
KRH76655	Soybean	plastid	32.87	29.75
Bra040872.1-P	Field mustard	plastid	32.87	29.56
Bra037247.1-P	Field mustard	plastid	31.47	29.22
HORVU7Hr1G057330.1	Barley	plastid	28.67	29.08
GSMUA_Achr1P02450_001	Banana	plastid	29.37	28.38
KRH08066	Soybean	plastid	30.77	28.03
CDY24828	Canola	plastid	31.47	27.95
Bra010502.1-P	Field mustard	plastid	31.47	27.95
AT4G36040.1	Thale cress	plastid	31.47	27.95
Os08t0548400-00	Rice	plastid	27.97	27.4
CDY34072	Canola	plastid	30.77	27.33
Zm00001d053213_P001	Maize	mitochondrion, plastid	26.57	27.14
TraesCS7A01G271600.1	Wheat	plastid	26.57	26.95
TraesCS7D01G516900.1	Wheat	plastid	25.87	26.62
TraesCS7B01G445500.1	Wheat	plastid	25.87	26.62
HORVU7Hr1G116960.1	Barley	plastid	25.17	26.47
TraesCS7D01G271900.1	Wheat	plastid	25.87	26.24
TraesCS7B01G170400.1	Wheat	plastid	25.87	26.24
Zm00001d014790_P001	Maize	plastid	23.78	26.15
Zm00001d032030_P001	Maize	plastid	25.17	26.09
KRH08065	Soybean	plastid	30.07	26.06
TraesCS7A01G529000.1	Wheat	plastid	25.17	25.9
TraesCS7B01G445700.1	Wheat	plastid	25.17	25.9
TraesCS7D01G516700.1	Wheat	plastid	25.17	25.71
TraesCS7A01G528700.1	Wheat	plastid	25.17	25.71
PGSC0003DMT400025543	Potato	plastid	27.97	25.64
Os06t0716100-01	Rice	plastid	23.78	25.56
TraesCS3D01G308300.1	Wheat	plastid	24.48	25.55
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	25.87	25.34
Zm00001d028404_P001	Maize	plastid	27.27	25.32
TraesCS7D01G516600.1	Wheat	plastid	24.48	25.18
EER92566	Sorghum	plastid	27.97	25.16
HORVU7Hr1G116890.2	Barley	plastid	24.48	25.0
TraesCS7D01G517000.1	Wheat	plastid	24.48	25.0
TraesCS7B01G445800.1	Wheat	plastid	24.48	25.0
EER88964	Sorghum	plastid	23.78	24.82
TraesCS7B01G448500.1	Wheat	plastid	22.38	24.81
TraesCS7B01G446100.1	Wheat	mitochondrion, plastid	22.38	24.81
TraesCS7B01G445600.1	Wheat	plastid	23.78	24.64
TraesCS4B01G226300.1	Wheat	plastid	27.97	24.39
TraesCS7D01G516800.1	Wheat	plastid	23.78	24.29
TraesCS7A01G529200.1	Wheat	plastid	23.78	24.29
TraesCS7A01G528800.1	Wheat	plastid	23.08	24.26
GSMUA_Achr5P11400_001	Banana	plastid	25.87	24.03
TraesCS7A01G528900.1	Wheat	plastid	23.08	23.74
TraesCS7B01G446000.1	Wheat	plastid	20.98	23.26
TraesCS4A01G069100.1	Wheat	plastid	26.57	22.89
KXG25435	Sorghum	plastid	23.78	22.82
Os03t0244950-00	Rice	mitochondrion, nucleus, plastid	27.27	22.81
GSMUA_Achr8P19450_001	Banana	plastid	27.97	22.73
HORVU4Hr1G063590.1	Barley	plastid	27.27	22.54
TraesCS4D01G226900.1	Wheat	plastid	26.57	22.49
TraesCS7A01G529400.1	Wheat	plastid	20.28	22.31
KRH69779	Soybean	mitochondrion	31.47	22.06
TraesCS4B01G226200.1	Wheat	plastid	25.87	20.67
PGSC0003DMT400056985	Potato	plastid	23.08	20.12
PGSC0003DMT400056986	Potato	plastid	21.68	19.25
TraesCS7B01G445900.1	Wheat	mitochondrion, plastid	18.18	16.99

Protein Annotations

EnsemblPlants:PGSC0003DMT400009189	EnsemblPlantsGene:PGSC0003DMG400003565	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:IPR001623	InterPro:IPR036869
InterPro:J_dom_sf	PANTHER:PTHR44240	PANTHER:PTHR44240:SF3	PFAM:PF00226	PFscan:PS50076	PGSC:PGSC0003DMG400003565
PRINTS:PR00625	SEG:seg	SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI000295A99E	UniProt:M0ZVQ8
MapMan:35.1	:	:	:	:	:

Description

DnaJ [Source:PGSC_GENE;Acc:PGSC0003DMG400003565]

Coordinates

chr2:-:39343660..39344698

Molecular Weight (calculated)

15243.9 Da

IEP (calculated)

7.438

GRAVY (calculated)

-0.103

Length

143 amino acids

Sequence
(BLAST)

001: MPMLSTSPRS FLQTPPPPVN IFSSGDNSVL SPSSVRFRQS GIFTTAAAAT CASVETESTT SSASRYSTLP SNLVHASPAS FYEILGIPIG ATIQEIKAAY
101: RRLARVCHPD VAAIDQKDTS ADDFMKIHSA YSTLSDPGQT CRL

Best Arabidopsis Sequence Match ( AT2G17880.1 )
(BLAST)

001: MLSSSPTFFA TPFLSSSSSS SPSFSSTSPP SRISRISPSL STTTASYTCA EDLPRLRQIP QRFSATASLY EILEIPVGST SQEIKSAYRR LARICHPDVA
101: RNSRDNSSAD DFMKIHAAYC TLSDPEKRAV YDRRTLLRSR PLTAGYGSYG GRNWETDQCW

Arabidopsis Description

At2g17880 [Source:UniProtKB/TrEMBL;Acc:O48828]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.