Factsheet for TraesCS7B01G446100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G215300.1
TraesCS1B01G228800.1
TraesCS1D01G217800.1
TraesCS6A01G262200.1
TraesCS6B01G289500.1
TraesCS6D01G243000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17880.1	TraesCS1A01G215300.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS1B01G228800.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS1D01G217800.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS6A01G262200.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS6B01G289500.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS6D01G243000.1	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G446000.1	Wheat	plastid	83.72	83.72
TraesCS7D01G516600.1	Wheat	plastid	82.95	76.98
TraesCS7B01G445500.1	Wheat	plastid	80.62	74.82
HORVU7Hr1G116960.1	Barley	plastid	77.52	73.53
TraesCS7B01G445600.1	Wheat	plastid	78.29	73.19
HORVU7Hr1G116890.2	Barley	plastid	77.52	71.43
TraesCS7B01G445800.1	Wheat	plastid	77.52	71.43
TraesCS7B01G445700.1	Wheat	plastid	76.74	71.22
TraesCS7B01G448500.1	Wheat	plastid	69.77	69.77
Os06t0716100-01	Rice	plastid	63.57	61.65
Zm00001d014790_P001	Maize	plastid	62.02	61.54
EER88964	Sorghum	plastid	59.69	56.2
TraesCS7B01G170400.1	Wheat	plastid	48.84	44.68
KRH69778	Soybean	mitochondrion	33.33	42.16
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	44.96	39.73
TraesCS7B01G127100.1	Wheat	cytosol, mitochondrion	30.23	39.39
TraesCS7B01G445900.1	Wheat	mitochondrion, plastid	46.51	39.22
TraesCS4B01G226300.1	Wheat	plastid	43.41	34.15
VIT_03s0038g02110.t01	Wine grape	cytosol, nucleus, plastid	37.98	32.45
KRH76655	Soybean	plastid	39.53	32.28
KRH28802	Soybean	plastid	38.76	31.65
Solyc02g062160.1.1	Tomato	plastid	34.88	29.22
KRH38394	Soybean	plastid	30.23	28.06
KRH08066	Soybean	plastid	34.11	28.03
PGSC0003DMT400061357	Potato	plastid	31.78	26.8
Bra017744.1-P	Field mustard	plastid	33.33	26.71
CDY26834	Canola	plastid	32.56	26.58
Bra011656.1-P	Field mustard	plastid	32.56	26.42
TraesCS4B01G226200.1	Wheat	plastid	36.43	26.26
AT2G17880.1	Thale cress	plastid	32.56	26.25
AT4G36040.1	Thale cress	plastid	32.56	26.09
Bra010502.1-P	Field mustard	plastid	32.56	26.09
CDY24828	Canola	plastid	32.56	26.09
CDY34072	Canola	plastid	32.56	26.09
CDX69193	Canola	plastid	32.56	25.93
KRG99625	Soybean	plastid	26.36	25.76
CDX75547	Canola	plastid	31.78	25.62
CDX72573	Canola	plastid	31.78	25.47
Bra037247.1-P	Field mustard	plastid	30.23	25.32
KRH08065	Soybean	plastid	31.78	24.85
CDY30342	Canola	plastid	29.46	24.68
CDY07811	Canola	plastid	30.23	24.07
CDY29205	Canola	plastid	29.46	23.9
Bra040872.1-P	Field mustard	plastid	29.46	23.9
KRH20682	Soybean	plastid	24.81	23.19
KRH50148	Soybean	plastid	24.81	22.7
PGSC0003DMT400009189	Potato	plastid	24.81	22.38
VIT_04s0023g03470.t01	Wine grape	cytosol, plastid	31.78	20.4
KRH69779	Soybean	mitochondrion	29.46	18.63

Protein Annotations

EnsemblPlants:TraesCS7B01G446100.1	EnsemblPlantsGene:TraesCS7B01G446100	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR44240	PFAM:PF00226	PFscan:PS50076	PRINTS:PR00625
ScanProsite:PS00636	SEG:seg	SMART:SM00271	SUPFAM:SSF46565	TIGR:cd06257	MapMan:35.2

Description

No Description!

Coordinates

chr7B:+:709496311..709496700

Molecular Weight (calculated)

13657.1 Da

IEP (calculated)

10.047

GRAVY (calculated)

-0.312

Length

129 amino acids

Sequence
(BLAST)

001: MATFAAATVA LPGRVAGTRR CVMAPASAAP AAPGRTHYEV LGVGAAASRG EIKAAYRRLA REVHPDAAGD GGDEGFIRLH AAYATLADPD ERARYDRDVA
101: GRAAAMMTRR AAASGPAFRR RTWETDQCW

Best Arabidopsis Sequence Match ( AT2G17880.1 )
(BLAST)

001: MLSSSPTFFA TPFLSSSSSS SPSFSSTSPP SRISRISPSL STTTASYTCA EDLPRLRQIP QRFSATASLY EILEIPVGST SQEIKSAYRR LARICHPDVA
101: RNSRDNSSAD DFMKIHAAYC TLSDPEKRAV YDRRTLLRSR PLTAGYGSYG GRNWETDQCW

Arabidopsis Description

At2g17880 [Source:UniProtKB/TrEMBL;Acc:O48828]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.