Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G226300.1 | Wheat | plastid | 53.63 | 58.54 |
| TraesCS4D01G226900.1 | Wheat | plastid | 51.96 | 55.03 |
| TraesCS4A01G069100.1 | Wheat | plastid | 50.28 | 54.22 |
| HORVU4Hr1G063590.1 | Barley | plastid | 49.16 | 50.87 |
| EER92566 | Sorghum | plastid | 39.11 | 44.03 |
| Os03t0244950-00 | Rice | mitochondrion, nucleus, plastid | 41.9 | 43.86 |
| Zm00001d028404_P001 | Maize | plastid | 37.43 | 43.51 |
| GSMUA_Achr1P02450_001 | Banana | plastid | 34.08 | 41.22 |
| KRH69778 | Soybean | mitochondrion | 22.35 | 39.22 |
| TraesCS7B01G445600.1 | Wheat | plastid | 29.61 | 38.41 |
| TraesCS7B01G448500.1 | Wheat | plastid | 27.37 | 37.98 |
| TraesCS7B01G446000.1 | Wheat | plastid | 26.26 | 36.43 |
| TraesCS7B01G446100.1 | Wheat | mitochondrion, plastid | 26.26 | 36.43 |
| KRH76655 | Soybean | plastid | 31.84 | 36.08 |
| TraesCS7B01G445700.1 | Wheat | plastid | 27.93 | 35.97 |
| CDX69193 | Canola | plastid | 32.4 | 35.8 |
| TraesCS7B01G445800.1 | Wheat | plastid | 27.93 | 35.71 |
| TraesCS7B01G445500.1 | Wheat | plastid | 27.37 | 35.25 |
| Bra011656.1-P | Field mustard | plastid | 31.28 | 35.22 |
| KRH28802 | Soybean | plastid | 30.73 | 34.81 |
| AT4G36040.1 | Thale cress | plastid | 31.28 | 34.78 |
| CDX72573 | Canola | plastid | 30.73 | 34.16 |
| TraesCS7B01G170400.1 | Wheat | plastid | 26.26 | 33.33 |
| CDX75547 | Canola | plastid | 29.61 | 33.12 |
| Bra010502.1-P | Field mustard | plastid | 29.61 | 32.92 |
| CDY24828 | Canola | plastid | 29.61 | 32.92 |
| GSMUA_Achr5P11400_001 | Banana | plastid | 27.93 | 32.47 |
| CDY34072 | Canola | plastid | 29.05 | 32.3 |
| Bra017744.1-P | Field mustard | plastid | 28.49 | 31.68 |
| GSMUA_Achr5P18850_001 | Banana | plastid | 30.17 | 31.58 |
| AT2G17880.1 | Thale cress | plastid | 27.93 | 31.25 |
| CDY30342 | Canola | plastid | 26.82 | 31.17 |
| Bra037247.1-P | Field mustard | plastid | 26.82 | 31.17 |
| KRH20682 | Soybean | plastid | 24.02 | 31.16 |
| KRH38394 | Soybean | plastid | 24.02 | 30.94 |
| CDY26834 | Canola | plastid | 26.82 | 30.38 |
| CDY29205 | Canola | plastid | 26.82 | 30.19 |
| Bra040872.1-P | Field mustard | plastid | 26.82 | 30.19 |
| TraesCS7B01G445900.1 | Wheat | mitochondrion, plastid | 25.7 | 30.07 |
| KRH08066 | Soybean | plastid | 26.26 | 29.94 |
| GSMUA_Achr8P19450_001 | Banana | plastid | 29.05 | 29.55 |
| KRH08065 | Soybean | plastid | 26.26 | 28.48 |
| VIT_03s0038g02110.t01 | Wine grape | cytosol, nucleus, plastid | 24.02 | 28.48 |
| CDY07811 | Canola | plastid | 25.7 | 28.4 |
| TraesCS7B01G127100.1 | Wheat | cytosol, mitochondrion | 15.64 | 28.28 |
| Solyc02g062160.1.1 | Tomato | plastid | 24.02 | 27.92 |
| PGSC0003DMT400061357 | Potato | plastid | 23.46 | 27.45 |
| KRG99625 | Soybean | plastid | 20.11 | 27.27 |
| PGSC0003DMT400009189 | Potato | plastid | 20.67 | 25.87 |
| KRH50148 | Soybean | plastid | 19.55 | 24.82 |
| VIT_04s0023g03470.t01 | Wine grape | cytosol, plastid | 27.37 | 24.38 |
| KRH69779 | Soybean | mitochondrion | 21.23 | 18.63 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G226200.1 | EnsemblPlantsGene:TraesCS4B01G226200 | Gene3D:1.10.287.110 | InterPro:DnaJ_domain | InterPro:DnaJ_domain_CS | InterPro:IPR001623 |
| InterPro:IPR036869 | InterPro:J_dom_sf | PANTHER:PTHR44240 | PANTHER:PTHR44240:SF4 | PFAM:PF00226 | PFscan:PS50076 |
| PRINTS:PR00625 | ScanProsite:PS00636 | SEG:seg | SMART:SM00271 | SUPFAM:SSF46565 | TIGR:cd06257 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4B:+:472640782..472641321
Molecular Weight (calculated)
19311.8 Da
IEP (calculated)
8.850
GRAVY (calculated)
-0.159
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MISPCPTLSF HSSGFFSRSA SFSRPASFSP RPMSPPALPA GQAPPPVLSA QFAHPATLSR SAFFSTSDVA VLVRDASSCF YEVLGLDAGA SDGEIKAAYH
101: CLARAVHPNV SLHPATSADD FIRVHAAYSM LSNPSKRNDY DRRMIMIPSA VGCRSGPNLA RSPSFTGCRR RTWETDQCW
101: CLARAVHPNV SLHPATSADD FIRVHAAYSM LSNPSKRNDY DRRMIMIPSA VGCRSGPNLA RSPSFTGCRR RTWETDQCW
001: MLSSSPTFFA TPFLSSSSSS SPSFSSTSPP SRISRISPSL STTTASYTCA EDLPRLRQIP QRFSATASLY EILEIPVGST SQEIKSAYRR LARICHPDVA
101: RNSRDNSSAD DFMKIHAAYC TLSDPEKRAV YDRRTLLRSR PLTAGYGSYG GRNWETDQCW
101: RNSRDNSSAD DFMKIHAAYC TLSDPEKRAV YDRRTLLRSR PLTAGYGSYG GRNWETDQCW
Arabidopsis Description
At2g17880 [Source:UniProtKB/TrEMBL;Acc:O48828]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.