Factsheet for GSMUA_Achr5P18850_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
nucleus 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P00560_001
GSMUA_Achr2P12040_001
GSMUA_Achr2P18250_001
GSMUA_Achr4P21690_001
GSMUA_Achr4P30100_001
GSMUA_Achr8P14860_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17880.1	GSMUA_Achr1P00560_001	AT4G17680.1	21798944
AT2G17880.1	GSMUA_Achr2P12040_001	AT4G17680.1	21798944
AT2G17880.1	GSMUA_Achr2P18250_001	AT4G17680.1	21798944
AT2G17880.1	GSMUA_Achr4P21690_001	AT4G17680.1	21798944
AT2G17880.1	GSMUA_Achr4P30100_001	AT4G17680.1	21798944
AT2G17880.1	GSMUA_Achr8P14860_001	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P19450_001	Banana	plastid	58.48	56.82
GSMUA_Achr5P11400_001	Banana	plastid	46.78	51.95
KRH69778	Soybean	mitochondrion	30.41	50.98
GSMUA_Achr1P02450_001	Banana	plastid	43.27	50.0
GSMUA_Achr1P18570_001	Banana	mitochondrion	39.18	47.86
EER92566	Sorghum	plastid	41.52	44.65
GSMUA_Achr3P12640_001	Banana	plastid	33.92	43.61
Zm00001d028404_P001	Maize	plastid	39.18	43.51
KRH28802	Soybean	plastid	37.43	40.51
CDY30342	Canola	plastid	35.67	39.61
KRH76655	Soybean	plastid	36.26	39.24
CDX72573	Canola	plastid	36.84	39.13
VIT_03s0038g02110.t01	Wine grape	cytosol, nucleus, plastid	34.5	39.07
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	33.33	39.04
GSMUA_Achr4P01700_001	Banana	plastid	29.24	38.76
CDX75547	Canola	plastid	36.26	38.75
Bra037247.1-P	Field mustard	plastid	34.5	38.31
AT4G36040.1	Thale cress	plastid	35.67	37.89
TraesCS4D01G226900.1	Wheat	plastid	37.43	37.87
TraesCS4B01G226300.1	Wheat	plastid	36.26	37.8
CDX69193	Canola	plastid	35.67	37.65
AT2G17880.1	Thale cress	plastid	35.09	37.5
CDY29205	Canola	plastid	33.92	36.48
Bra011656.1-P	Field mustard	plastid	33.92	36.48
PGSC0003DMT400009189	Potato	plastid	30.41	36.36
KRH08066	Soybean	plastid	33.33	36.31
TraesCS4A01G069100.1	Wheat	plastid	35.09	36.14
PGSC0003DMT400061357	Potato	plastid	32.16	35.95
Bra040872.1-P	Field mustard	plastid	33.33	35.85
HORVU4Hr1G063590.1	Barley	plastid	36.26	35.84
CDY26834	Canola	plastid	32.75	35.44
CDY34072	Canola	plastid	33.33	35.4
Bra010502.1-P	Field mustard	plastid	33.33	35.4
CDY24828	Canola	plastid	33.33	35.4
Bra017744.1-P	Field mustard	plastid	32.75	34.78
Os03t0244950-00	Rice	mitochondrion, nucleus, plastid	34.5	34.5
KRG99625	Soybean	plastid	26.32	34.09
CDY07811	Canola	plastid	32.16	33.95
KRH50148	Soybean	plastid	27.49	33.33
KRH38394	Soybean	plastid	26.9	33.09
KRH20682	Soybean	plastid	26.32	32.61
Solyc02g062160.1.1	Tomato	plastid	28.66	31.82
KRH08065	Soybean	plastid	29.82	30.91
TraesCS4B01G226200.1	Wheat	plastid	31.58	30.17
VIT_04s0023g03470.t01	Wine grape	cytosol, plastid	35.09	29.85
GSMUA_Achr9P19770_001	Banana	plastid	21.05	28.35
KRH69779	Soybean	mitochondrion	30.99	25.98

Protein Annotations

Gene3D:1.10.287.110	MapMan:35.1	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	EnsemblPlantsGene:GSMUA_Achr5G18850_001	EnsemblPlants:GSMUA_Achr5P18850_001
EnsemblPlants:GSMUA_Achr5T18850_001	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	UniProt:M0SZR4	PFAM:PF00226
PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR44240	SMART:SM00271	SUPFAM:SSF46565
UniParc:UPI000295B91B	SEG:seg	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G18850_001]

Coordinates

chr5:+:20361581..20362419

Molecular Weight (calculated)

18211.5 Da

IEP (calculated)

10.592

GRAVY (calculated)

-0.304

Length

171 amino acids

Sequence
(BLAST)

001: MSPSSLSSSQ FLGLRIAPPP NTTAASLSPR SPSSLRSPRV SAAYAAAAEC PRAAHAPVPA AVANPSSLYD VLGVSPGASG QEIKAAYRQL ALACHPDVIA
101: TGRKGASAEK FMRVHAAYAT LSDPGKRANY DRELAAAAML VRHRWPAART YARSTSFPRY GRRTWETDQC W

Best Arabidopsis Sequence Match ( AT2G17880.1 )
(BLAST)

001: MLSSSPTFFA TPFLSSSSSS SPSFSSTSPP SRISRISPSL STTTASYTCA EDLPRLRQIP QRFSATASLY EILEIPVGST SQEIKSAYRR LARICHPDVA
101: RNSRDNSSAD DFMKIHAAYC TLSDPEKRAV YDRRTLLRSR PLTAGYGSYG GRNWETDQCW

Arabidopsis Description

At2g17880 [Source:UniProtKB/TrEMBL;Acc:O48828]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.