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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 7
  • cytosol 2
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX90458
CDY09609

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY30342 Canola plastid 77.85 79.87
AT2G17880.1 Thale cress plastid 70.25 69.38
CDX75547 Canola plastid 66.46 65.62
CDX69193 Canola plastid 65.19 63.58
CDX72573 Canola plastid 63.92 62.73
CDY07811 Canola plastid 63.92 62.35
CDY29205 Canola plastid 62.66 62.26
CDY24828 Canola plastid 62.03 60.87
CDY34072 Canola plastid 61.39 60.25
KRH69778 Soybean mitochondrion 36.08 55.88
KRH28802 Soybean plastid 45.57 45.57
KRH76655 Soybean plastid 44.94 44.94
CDY44009 Canola cytosol 13.92 40.74
KRH08066 Soybean plastid 39.87 40.13
Zm00001d053213_P001 Maize mitochondrion, plastid 34.18 38.57
GSMUA_Achr1P18570_001 Banana mitochondrion 34.18 38.57
Solyc02g062160.1.1 Tomato plastid 37.34 38.31
VIT_03s0038g02110.t01 Wine grape cytosol, nucleus, plastid 36.08 37.75
HORVU7Hr1G057330.1 Barley plastid 33.54 37.59
KRH38394 Soybean plastid 32.91 37.41
Zm00001d014790_P001 Maize plastid 30.38 36.92
GSMUA_Achr3P12640_001 Banana plastid 31.01 36.84
KRG99625 Soybean plastid 30.38 36.36
KRH08065 Soybean plastid 37.34 35.76
KXG25435 Sorghum plastid 33.54 35.57
KRH20682 Soybean plastid 31.01 35.51
TraesCS7D01G271900.1 Wheat plastid 31.65 35.46
GSMUA_Achr5P11400_001 Banana plastid 34.18 35.06
Zm00001d032030_P001 Maize plastid 30.38 34.78
TraesCS7B01G170400.1 Wheat plastid 31.01 34.75
PGSC0003DMT400061357 Potato plastid 33.54 34.64
GSMUA_Achr1P02450_001 Banana plastid 32.28 34.46
PGSC0003DMT400009189 Potato plastid 31.01 34.27
TraesCS7A01G271600.1 Wheat plastid 30.38 34.04
TraesCS4D01G226900.1 Wheat plastid 36.08 33.73
GSMUA_AchrUn_... Banana mitochondrion, plastid 31.01 33.56
TraesCS7B01G448500.1 Wheat plastid 27.22 33.33
EER88964 Sorghum plastid 28.48 32.85
VIT_04s0023g03470.t01 Wine grape cytosol, plastid 41.77 32.84
GSMUA_Achr5P18850_001 Banana plastid 35.44 32.75
KRH50148 Soybean plastid 29.11 32.62
TraesCS7B01G446100.1 Wheat mitochondrion, plastid 26.58 32.56
TraesCS7B01G445500.1 Wheat plastid 28.48 32.37
TraesCS4B01G226300.1 Wheat plastid 33.54 32.32
TraesCS7A01G529400.1 Wheat plastid 26.58 32.31
Os03t0244950-00 Rice mitochondrion, nucleus, plastid 34.81 32.16
EER92566 Sorghum plastid 32.28 32.08
TraesCS4A01G069100.1 Wheat plastid 33.54 31.93
HORVU7Hr1G116960.1 Barley plastid 27.22 31.62
Os08t0548400-00 Rice plastid 29.11 31.51
TraesCS7A01G529200.1 Wheat plastid 27.85 31.43
Zm00001d028404_P001 Maize plastid 30.38 31.17
TraesCS7B01G445600.1 Wheat plastid 27.22 31.16
TraesCS7B01G445700.1 Wheat plastid 27.22 30.94
TraesCS7D01G516600.1 Wheat plastid 27.22 30.94
TraesCS7A01G528900.1 Wheat plastid 27.22 30.94
TraesCS7A01G529000.1 Wheat plastid 27.22 30.94
TraesCS7B01G445800.1 Wheat plastid 27.22 30.71
TraesCS7A01G528700.1 Wheat plastid 27.22 30.71
TraesCS7D01G516900.1 Wheat plastid 26.58 30.22
GSMUA_Achr8P19450_001 Banana plastid 33.54 30.11
Os06t0716100-01 Rice plastid 25.32 30.08
TraesCS7D01G517000.1 Wheat plastid 26.58 30.0
HORVU4Hr1G063590.1 Barley plastid 32.28 29.48
TraesCS7B01G446000.1 Wheat plastid 24.05 29.46
HORVU7Hr1G116890.2 Barley plastid 25.95 29.29
TraesCS7D01G516700.1 Wheat plastid 25.95 29.29
TraesCS7D01G516800.1 Wheat plastid 25.95 29.29
TraesCS3D01G308300.1 Wheat plastid 25.32 29.2
TraesCS7A01G528800.1 Wheat plastid 24.68 28.68
CDY24196 Canola plastid 28.48 28.3
CDY23588 Canola plastid 28.48 27.95
CDY43357 Canola plastid 27.22 27.04
TraesCS4B01G226200.1 Wheat plastid 30.38 26.82
CDX75702 Canola plastid 27.22 26.71
CDX82546 Canola plastid 26.58 26.58
TraesCS7B01G445900.1 Wheat mitochondrion, plastid 22.78 23.53
KRH69779 Soybean mitochondrion 30.38 23.53
Protein Annotations
EnsemblPlants:CDY26834EnsemblPlantsGene:GSBRNA2T00035791001Gene3D:1.10.287.110InterPro:DnaJ_domainInterPro:IPR001623InterPro:IPR036869
InterPro:J_dom_sfPANTHER:PTHR44240PANTHER:PTHR44240:SF1PFAM:PF00226PFscan:PS50076PRINTS:PR00625
ProteinID:CDY26834ProteinID:CDY26834.1SEG:segSMART:SM00271SUPFAM:SSF46565UniParc:UPI0004EF2B62
UniProt:A0A078GNL0MapMan:35.1::::
Description
BnaC09g09610DBnaC09g09610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GNL0]
Coordinates
chrLK032194:-:525253..525898
Molecular Weight (calculated)
17123.1 Da
IEP (calculated)
9.321
GRAVY (calculated)
-0.416
Length
158 amino acids
Sequence
(BLAST)
001: MLSSSPTFFA PPFLSSSPPS LSPPSRTSRP SPSLSATATT TASSRYTCAD DPPRRQIPQR LSAAASLYEI LEIPVGSTSQ EIKSAYRRLA RICHPDVAGN
101: GRSAGEFVKI HAAYCTLSDP EKRAVYDRRI LRRSRPLSAG VSGFDSCVGG NWETDQCW
Best Arabidopsis Sequence Match ( AT2G17880.1 )
(BLAST)
001: MLSSSPTFFA TPFLSSSSSS SPSFSSTSPP SRISRISPSL STTTASYTCA EDLPRLRQIP QRFSATASLY EILEIPVGST SQEIKSAYRR LARICHPDVA
101: RNSRDNSSAD DFMKIHAAYC TLSDPEKRAV YDRRTLLRSR PLTAGYGSYG GRNWETDQCW
Arabidopsis Description
At2g17880 [Source:UniProtKB/TrEMBL;Acc:O48828]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.