CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05709
KXG38894

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17880.1	EES05709	AT4G17680.1	21798944
AT2G17880.1	KXG38894	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053213_P001	Maize	mitochondrion, plastid	65.1	69.29
Zm00001d032030_P001	Maize	plastid	50.34	54.35
KRH69778	Soybean	mitochondrion	35.57	51.96
HORVU7Hr1G057330.1	Barley	plastid	48.32	51.06
TraesCS7A01G271600.1	Wheat	plastid	48.32	51.06
TraesCS7D01G271900.1	Wheat	plastid	47.65	50.35
Os08t0548400-00	Rice	plastid	48.99	50.0
TraesCS7B01G170400.1	Wheat	plastid	46.98	49.65
EER89648	Sorghum	plastid	32.21	46.6
EER88964	Sorghum	plastid	38.26	41.61
KRH76655	Soybean	plastid	40.94	38.61
KRH28802	Soybean	plastid	40.27	37.97
EER92566	Sorghum	plastid	39.6	37.11
KRH08066	Soybean	plastid	38.93	36.94
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	34.9	35.62
CDY30342	Canola	plastid	36.24	35.06
VIT_03s0038g02110.t01	Wine grape	cytosol, nucleus, plastid	34.9	34.44
CDY26834	Canola	plastid	35.57	33.54
Bra037247.1-P	Field mustard	plastid	34.23	33.12
Bra017744.1-P	Field mustard	plastid	35.57	32.92
Solyc02g062160.1.1	Tomato	plastid	32.89	31.82
CDX72573	Canola	plastid	34.23	31.68
KRH38394	Soybean	plastid	29.53	31.65
Bra011656.1-P	Field mustard	plastid	33.56	31.45
CDX75547	Canola	plastid	33.56	31.25
AT2G17880.1	Thale cress	plastid	33.56	31.25
AT4G36040.1	Thale cress	plastid	33.56	31.06
CDY34072	Canola	plastid	33.56	31.06
CDX69193	Canola	plastid	33.56	30.86
CDY24828	Canola	plastid	32.89	30.43
Bra010502.1-P	Field mustard	plastid	32.89	30.43
KRH08065	Soybean	plastid	33.56	30.3
PGSC0003DMT400061357	Potato	plastid	30.87	30.07
CDY29205	Canola	plastid	30.87	28.93
Bra040872.1-P	Field mustard	plastid	30.87	28.93
KRG99625	Soybean	plastid	24.83	28.03
CDY07811	Canola	plastid	30.2	27.78
VIT_04s0023g03470.t01	Wine grape	cytosol, plastid	36.91	27.36
KRH50148	Soybean	plastid	23.49	24.82
KRH20682	Soybean	plastid	22.15	23.91
PGSC0003DMT400009189	Potato	plastid	22.82	23.78
KRH69779	Soybean	mitochondrion	29.53	21.57

Protein Annotations

Gene3D:1.10.287.110	MapMan:35.2	UniProt:A0A1B6PIL8	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	EnsemblPlants:KXG25435	ProteinID:KXG25435	ProteinID:KXG25435.1	PFAM:PF00226
PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR44240	PANTHER:PTHR44240:SF2	SMART:SM00271
EnsemblPlantsGene:SORBI_3007G178000	SUPFAM:SSF46565	UniParc:UPI00081ABE9F	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:-:61137487..61138052

Molecular Weight (calculated)

15404.3 Da

IEP (calculated)

10.803

GRAVY (calculated)

-0.228

Length

149 amino acids

Sequence
(BLAST)

001: MISAPLRVSA PKAAVGGGSF LFGGASYVDS KPSKIKIRCA AAAAPAVGRG GAAAAAATLY EVLGLRAGAT GREIKAAYRR LARERHPDVA PAPGAAAEFV
101: RLHDAYATLS DPDTRARYDR GAVAVAQRPW SGGGGGGRPR RTWETDQCW

Best Arabidopsis Sequence Match ( AT2G17880.1 )
(BLAST)

001: MLSSSPTFFA TPFLSSSSSS SPSFSSTSPP SRISRISPSL STTTASYTCA EDLPRLRQIP QRFSATASLY EILEIPVGST SQEIKSAYRR LARICHPDVA
101: RNSRDNSSAD DFMKIHAAYC TLSDPEKRAV YDRRTLLRSR PLTAGYGSYG GRNWETDQCW

Arabidopsis Description

At2g17880 [Source:UniProtKB/TrEMBL;Acc:O48828]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.