Factsheet for TraesCS7D01G271900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G215300.1
TraesCS1B01G228800.1
TraesCS1D01G217800.1
TraesCS6A01G262200.1
TraesCS6B01G289500.1
TraesCS6D01G243000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17880.1	TraesCS1A01G215300.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS1B01G228800.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS1D01G217800.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS6A01G262200.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS6B01G289500.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS6D01G243000.1	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G271600.1	Wheat	plastid	96.45	96.45
TraesCS7B01G170400.1	Wheat	plastid	92.91	92.91
HORVU7Hr1G057330.1	Barley	plastid	80.85	80.85
Zm00001d053213_P001	Maize	mitochondrion, plastid	49.65	50.0
Os08t0548400-00	Rice	plastid	51.77	50.0
Zm00001d032030_P001	Maize	plastid	48.23	49.28
TraesCS7D01G516900.1	Wheat	plastid	47.52	48.2
TraesCS7D01G517000.1	Wheat	plastid	47.52	47.86
KXG25435	Sorghum	plastid	50.35	47.65
TraesCS7D01G516600.1	Wheat	plastid	46.1	46.76
TraesCS7D01G516700.1	Wheat	plastid	46.1	46.43
KRH69778	Soybean	mitochondrion	33.33	46.08
TraesCS3D01G308300.1	Wheat	plastid	43.97	45.26
TraesCS7D01G516800.1	Wheat	plastid	42.55	42.86
TraesCS7D01G221800.1	Wheat	plastid	29.08	37.61
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	36.88	35.62
TraesCS4D01G226900.1	Wheat	plastid	41.84	34.91
CDY30342	Canola	plastid	36.88	33.77
AT2G17880.1	Thale cress	plastid	37.59	33.12
VIT_03s0038g02110.t01	Wine grape	cytosol, nucleus, plastid	35.46	33.11
KRH76655	Soybean	plastid	36.88	32.91
KRH08066	Soybean	plastid	36.17	32.48
Bra037247.1-P	Field mustard	plastid	35.46	32.47
KRH28802	Soybean	plastid	36.17	32.28
Bra040872.1-P	Field mustard	plastid	36.17	32.08
CDY26834	Canola	plastid	35.46	31.65
Bra017744.1-P	Field mustard	plastid	35.46	31.06
CDX69193	Canola	plastid	35.46	30.86
CDY29205	Canola	plastid	34.75	30.82
Bra011656.1-P	Field mustard	plastid	34.75	30.82
PGSC0003DMT400061357	Potato	plastid	33.33	30.72
Solyc02g062160.1.1	Tomato	plastid	33.33	30.52
AT4G36040.1	Thale cress	plastid	34.75	30.43
CDX75547	Canola	plastid	34.04	30.0
CDY07811	Canola	plastid	34.04	29.63
CDY34072	Canola	plastid	33.33	29.19
CDY24828	Canola	plastid	33.33	29.19
Bra010502.1-P	Field mustard	plastid	33.33	29.19
KRH08065	Soybean	plastid	34.04	29.09
CDX72573	Canola	plastid	32.62	28.57
KRH50148	Soybean	plastid	27.66	27.66
KRH38394	Soybean	plastid	26.95	27.34
PGSC0003DMT400009189	Potato	plastid	26.24	25.87
VIT_04s0023g03470.t01	Wine grape	cytosol, plastid	36.88	25.87
KRH20682	Soybean	plastid	24.82	25.36
KRG99625	Soybean	plastid	22.7	24.24
KRH69779	Soybean	mitochondrion	31.21	21.57

Protein Annotations

EnsemblPlants:TraesCS7D01G271900.1	EnsemblPlantsGene:TraesCS7D01G271900	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR44240	PANTHER:PTHR44240:SF2	PFAM:PF00226	PFscan:PS50076
PRINTS:PR00625	ScanProsite:PS00636	SEG:seg	SMART:SM00271	SUPFAM:SSF46565	TIGR:cd06257
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr7D:+:261879558..261879983

Molecular Weight (calculated)

15275.0 Da

IEP (calculated)

9.930

GRAVY (calculated)

-0.382

Length

141 amino acids

Sequence
(BLAST)

001: MISPPPVMQS SAARPALAGF RHAAACSSSR RTVRCAVAVA SAAPAGRCTL YEVLGLRAGA TRGEIKAAYR RLARERHPDV AGAAGDDFIR LHDAYATLSD
101: PDARARYDRD VVVQAYAQPP AARPDGVWGR PRRTWETDQC W

Best Arabidopsis Sequence Match ( AT2G17880.1 )
(BLAST)

001: MLSSSPTFFA TPFLSSSSSS SPSFSSTSPP SRISRISPSL STTTASYTCA EDLPRLRQIP QRFSATASLY EILEIPVGST SQEIKSAYRR LARICHPDVA
101: RNSRDNSSAD DFMKIHAAYC TLSDPEKRAV YDRRTLLRSR PLTAGYGSYG GRNWETDQCW

Arabidopsis Description

At2g17880 [Source:UniProtKB/TrEMBL;Acc:O48828]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.