Factsheet for TraesCS3D01G308300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G215300.1
TraesCS1B01G228800.1
TraesCS1D01G217800.1
TraesCS6A01G262200.1
TraesCS6B01G289500.1
TraesCS6D01G243000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17880.1	TraesCS1A01G215300.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS1B01G228800.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS1D01G217800.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS6A01G262200.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS6B01G289500.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS6D01G243000.1	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G516900.1	Wheat	plastid	97.08	95.68
TraesCS7A01G529000.1	Wheat	plastid	92.7	91.37
TraesCS7D01G516600.1	Wheat	plastid	87.59	86.33
TraesCS7A01G528900.1	Wheat	plastid	86.13	84.89
TraesCS7B01G445700.1	Wheat	plastid	86.13	84.89
TraesCS7D01G516700.1	Wheat	plastid	83.94	82.14
HORVU7Hr1G116890.2	Barley	plastid	83.21	81.43
HORVU7Hr1G116960.1	Barley	plastid	79.56	80.15
TraesCS7D01G516800.1	Wheat	plastid	81.75	80.0
TraesCS7D01G517000.1	Wheat	plastid	80.29	78.57
Os06t0716100-01	Rice	plastid	57.66	59.4
Zm00001d014790_P001	Maize	plastid	54.74	57.69
EER88964	Sorghum	plastid	54.01	54.01
TraesCS7D01G271900.1	Wheat	plastid	45.26	43.97
KRH69778	Soybean	mitochondrion	29.93	40.2
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	40.15	37.67
TraesCS4D01G226900.1	Wheat	plastid	43.07	34.91
KRH76655	Soybean	plastid	35.04	30.38
TraesCS7D01G221800.1	Wheat	plastid	24.09	30.28
VIT_03s0038g02110.t01	Wine grape	cytosol, nucleus, plastid	32.85	29.8
KRH28802	Soybean	plastid	34.31	29.75
Solyc02g062160.1.1	Tomato	plastid	32.12	28.57
PGSC0003DMT400061357	Potato	plastid	30.66	27.45
KRH08066	Soybean	plastid	31.39	27.39
KRH38394	Soybean	plastid	27.74	27.34
KRG99625	Soybean	plastid	25.55	26.52
AT2G17880.1	Thale cress	plastid	29.93	25.62
CDX75547	Canola	plastid	29.93	25.62
CDY30342	Canola	plastid	28.47	25.32
CDY26834	Canola	plastid	29.2	25.32
CDX69193	Canola	plastid	29.93	25.31
CDY29205	Canola	plastid	29.2	25.16
Bra011656.1-P	Field mustard	plastid	29.2	25.16
Bra040872.1-P	Field mustard	plastid	29.2	25.16
CDY07811	Canola	plastid	29.2	24.69
PGSC0003DMT400009189	Potato	plastid	25.55	24.48
KRH08065	Soybean	plastid	29.2	24.24
Bra017744.1-P	Field mustard	plastid	28.47	24.22
AT4G36040.1	Thale cress	plastid	28.47	24.22
Bra037247.1-P	Field mustard	plastid	27.01	24.03
CDY24828	Canola	plastid	27.74	23.6
CDY34072	Canola	plastid	27.74	23.6
CDX72573	Canola	plastid	27.74	23.6
Bra010502.1-P	Field mustard	plastid	27.74	23.6
KRH50148	Soybean	plastid	24.09	23.4
KRH20682	Soybean	plastid	23.36	23.19
VIT_04s0023g03470.t01	Wine grape	cytosol, plastid	29.2	19.9
KRH69779	Soybean	mitochondrion	25.55	17.16

Protein Annotations

EnsemblPlants:TraesCS3D01G308300.1	EnsemblPlantsGene:TraesCS3D01G308300	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR44240	PANTHER:PTHR44240:SF2	PFAM:PF00226	PFscan:PS50076
PRINTS:PR00625	ScanProsite:PS00636	SEG:seg	SMART:SM00271	SUPFAM:SSF46565	TIGR:cd06257
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:422409457..422409870

Molecular Weight (calculated)

14508.3 Da

IEP (calculated)

10.601

GRAVY (calculated)

-0.243

Length

137 amino acids

Sequence
(BLAST)

001: MATFATSSSV VMWSARPGQV AGARRCVVAR ASATMAAPAA VATGRTHYEV LGLGAGSSKG EIKAAYRRLA REVHPDAVGG GGDEGFIRLH AAYATLADPD
101: ERARYDRHVT CRAAGMMMQR AAAAGPAFRR RTWETDQ

Best Arabidopsis Sequence Match ( AT2G17880.1 )
(BLAST)

001: MLSSSPTFFA TPFLSSSSSS SPSFSSTSPP SRISRISPSL STTTASYTCA EDLPRLRQIP QRFSATASLY EILEIPVGST SQEIKSAYRR LARICHPDVA
101: RNSRDNSSAD DFMKIHAAYC TLSDPEKRAV YDRRTLLRSR PLTAGYGSYG GRNWETDQCW

Arabidopsis Description

At2g17880 [Source:UniProtKB/TrEMBL;Acc:O48828]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.