CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2
endoplasmic reticulum 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04275
KRH28216
KRH57556
KRH77271

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17880.1	KRH04275	AT4G17680.1	21798944
AT2G17880.1	KRH28216	AT4G17680.1	21798944
AT2G17880.1	KRH57556	AT4G17680.1	21798944
AT2G17880.1	KRH77271	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69778	Soybean	mitochondrion	42.42	68.63
KRH08066	Soybean	plastid	53.94	56.69
KRH29260	Soybean	cytosol	33.33	54.46
KRH24255	Soybean	cytosol	32.12	52.48
KRH28802	Soybean	plastid	49.09	51.27
KRH76655	Soybean	plastid	47.88	50.0
KRH38394	Soybean	plastid	38.79	46.04
CDY30342	Canola	plastid	37.58	40.26
GSMUA_Achr1P18570_001	Banana	mitochondrion	33.33	39.29
VIT_03s0038g02110.t01	Wine grape	cytosol, nucleus, plastid	35.76	39.07
Solyc02g062160.1.1	Tomato	plastid	36.36	38.96
AT2G17880.1	Thale cress	plastid	36.97	38.12
KRG99625	Soybean	plastid	30.3	37.88
Bra037247.1-P	Field mustard	plastid	35.15	37.66
CDY26834	Canola	plastid	35.76	37.34
CDX72573	Canola	plastid	36.36	37.27
Bra040872.1-P	Field mustard	plastid	35.76	37.11
KRH20682	Soybean	plastid	30.91	36.96
VIT_04s0023g03470.t01	Wine grape	cytosol, plastid	44.24	36.32
KRH50148	Soybean	plastid	30.91	36.17
Bra017744.1-P	Field mustard	plastid	35.15	36.02
KRH14184	Soybean	mitochondrion, plastid	30.91	35.92
CDY29205	Canola	plastid	34.55	35.85
Zm00001d053213_P001	Maize	mitochondrion, plastid	30.3	35.71
HORVU7Hr1G057330.1	Barley	plastid	30.3	35.46
Bra010502.1-P	Field mustard	plastid	34.55	35.4
CDY24828	Canola	plastid	34.55	35.4
Bra011656.1-P	Field mustard	plastid	33.94	35.22
CDX75547	Canola	plastid	33.94	35.0
TraesCS7B01G170400.1	Wheat	plastid	29.7	34.75
AT4G36040.1	Thale cress	plastid	33.33	34.16
CDY34072	Canola	plastid	33.33	34.16
Zm00001d032030_P001	Maize	plastid	28.48	34.06
TraesCS7D01G271900.1	Wheat	plastid	29.09	34.04
CDX69193	Canola	plastid	33.33	33.95
CDY07811	Canola	plastid	33.33	33.95
KXG25435	Sorghum	plastid	30.3	33.56
TraesCS7A01G271600.1	Wheat	plastid	28.48	33.33
PGSC0003DMT400061357	Potato	plastid	30.91	33.33
HORVU7Hr1G116890.2	Barley	plastid	27.88	32.86
TraesCS7D01G517000.1	Wheat	plastid	27.88	32.86
EER88964	Sorghum	plastid	27.27	32.85
TraesCS7B01G448500.1	Wheat	plastid	25.45	32.56
GSMUA_Achr5P11400_001	Banana	plastid	30.3	32.47
KRH69779	Soybean	mitochondrion	40.0	32.35
GSMUA_Achr3P12640_001	Banana	plastid	26.06	32.33
TraesCS7A01G529200.1	Wheat	plastid	27.27	32.14
TraesCS7B01G445600.1	Wheat	plastid	26.67	31.88
TraesCS7B01G446100.1	Wheat	mitochondrion, plastid	24.85	31.78
TraesCS7B01G446000.1	Wheat	plastid	24.85	31.78
TraesCS7B01G445700.1	Wheat	plastid	26.67	31.65
TraesCS7D01G516600.1	Wheat	plastid	26.67	31.65
TraesCS7B01G445500.1	Wheat	plastid	26.67	31.65
HORVU7Hr1G116960.1	Barley	plastid	26.06	31.62
Zm00001d014790_P001	Maize	plastid	24.85	31.54
TraesCS7A01G528700.1	Wheat	plastid	26.67	31.43
TraesCS7B01G445800.1	Wheat	plastid	26.67	31.43
KRG98415	Soybean	plastid	28.48	31.13
TraesCS7D01G516900.1	Wheat	plastid	26.06	30.94
TraesCS7A01G529000.1	Wheat	plastid	26.06	30.94
Os06t0716100-01	Rice	plastid	24.85	30.83
Os08t0548400-00	Rice	plastid	27.27	30.82
TraesCS7A01G529400.1	Wheat	plastid	24.24	30.77
TraesCS7D01G516700.1	Wheat	plastid	26.06	30.71
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	26.67	30.14
PGSC0003DMT400009189	Potato	plastid	26.06	30.07
Zm00001d028404_P001	Maize	plastid	27.88	29.87
GSMUA_Achr5P18850_001	Banana	plastid	30.91	29.82
GSMUA_Achr1P02450_001	Banana	plastid	26.67	29.73
EER92566	Sorghum	plastid	28.48	29.56
TraesCS7A01G528900.1	Wheat	plastid	24.85	29.5
TraesCS7A01G528800.1	Wheat	plastid	24.24	29.41
TraesCS7D01G516800.1	Wheat	plastid	24.85	29.29
TraesCS4B01G226300.1	Wheat	plastid	29.09	29.27
TraesCS3D01G308300.1	Wheat	plastid	24.24	29.2
GSMUA_Achr8P19450_001	Banana	plastid	29.09	27.27
TraesCS4A01G069100.1	Wheat	plastid	27.27	27.11
TraesCS4D01G226900.1	Wheat	plastid	27.27	26.63
Os03t0244950-00	Rice	mitochondrion, nucleus, plastid	27.27	26.32
TraesCS4B01G226200.1	Wheat	plastid	28.48	26.26
KRH46491	Soybean	plastid	24.24	25.64
HORVU4Hr1G063590.1	Barley	plastid	26.67	25.43
TraesCS7B01G445900.1	Wheat	mitochondrion, plastid	23.03	24.84

Protein Annotations

EMBL:ACUP02010137	EnsemblPlants:KRH08065	EnsemblPlantsGene:GLYMA_16G127600	EntrezGene:100809952	Gene3D:1.10.287.110	InterPro:DnaJ_domain
InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR44240	PANTHER:PTHR44240:SF1	PFAM:PF00226
PFscan:PS50076	PRINTS:PR00625	ProteinID:KRH08065	ProteinID:KRH08065.1	SMART:SM00271	SUPFAM:SSF46565
UniParc:UPI000233F05B	UniProt:K7MH05	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:27950347..27950844

Molecular Weight (calculated)

19013.4 Da

IEP (calculated)

9.859

GRAVY (calculated)

-0.559

Length

165 amino acids

Sequence
(BLAST)

001: MLATSFSIVT LTTTNFSVES ISSLSHHVKL QSTVSFATAR WTEKQQQQQH RHVSDLSLHQ MASCTTLYEI LGIRVTASDE EIKAAYRRLA RVYHPDVAPA
101: ERKESFTGEF MKIHTAYRTL SDPEKRANYD RSLIRRHQKP LTMSSSSLWG FSGYTSHKWK TDQCW

Best Arabidopsis Sequence Match ( AT2G17880.1 )
(BLAST)

001: MLSSSPTFFA TPFLSSSSSS SPSFSSTSPP SRISRISPSL STTTASYTCA EDLPRLRQIP QRFSATASLY EILEIPVGST SQEIKSAYRR LARICHPDVA
101: RNSRDNSSAD DFMKIHAAYC TLSDPEKRAV YDRRTLLRSR PLTAGYGSYG GRNWETDQCW

Arabidopsis Description

At2g17880 [Source:UniProtKB/TrEMBL;Acc:O48828]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.