Factsheet for Zm00001d053213_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017649_P001
Zm00001d029988_P001
Zm00001d047069_P001
Zm00001d051484_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17880.1	Zm00001d017649_P001	AT4G17680.1	21798944
AT2G17880.1	Zm00001d029988_P001	AT4G17680.1	21798944
AT2G17880.1	Zm00001d047069_P001	AT4G17680.1	21798944
AT2G17880.1	Zm00001d051484_P001	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG25435	Sorghum	plastid	69.29	65.1
Zm00001d032030_P001	Maize	plastid	54.29	55.07
KRH69778	Soybean	mitochondrion	40.0	54.9
TraesCS7A01G271600.1	Wheat	plastid	50.71	50.35
TraesCS7D01G271900.1	Wheat	plastid	50.0	49.65
HORVU7Hr1G057330.1	Barley	plastid	50.0	49.65
TraesCS7B01G170400.1	Wheat	plastid	48.57	48.23
Os08t0548400-00	Rice	plastid	50.0	47.95
Zm00001d014790_P001	Maize	plastid	40.0	43.08
CDY30342	Canola	plastid	40.71	37.01
KRH08066	Soybean	plastid	40.0	35.67
Bra037247.1-P	Field mustard	plastid	38.57	35.06
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	36.43	34.93
KRH76655	Soybean	plastid	39.29	34.81
KRH28802	Soybean	plastid	39.29	34.81
VIT_03s0038g02110.t01	Wine grape	cytosol, nucleus, plastid	37.14	34.44
AT2G17880.1	Thale cress	plastid	39.29	34.38
CDY26834	Canola	plastid	38.57	34.18
Bra017744.1-P	Field mustard	plastid	39.29	34.16
CDX72573	Canola	plastid	39.29	34.16
Bra011656.1-P	Field mustard	plastid	38.57	33.96
AT4G36040.1	Thale cress	plastid	38.57	33.54
CDX69193	Canola	plastid	38.57	33.33
CDX75547	Canola	plastid	37.86	33.12
Zm00001d028404_P001	Maize	plastid	36.43	33.12
Solyc02g062160.1.1	Tomato	plastid	36.43	33.12
CDY24828	Canola	plastid	37.14	32.3
Bra010502.1-P	Field mustard	plastid	37.14	32.3
CDY29205	Canola	plastid	36.43	32.08
Bra040872.1-P	Field mustard	plastid	35.71	31.45
CDY34072	Canola	plastid	35.71	31.06
CDY07811	Canola	plastid	35.71	30.86
PGSC0003DMT400061357	Potato	plastid	33.57	30.72
KRH08065	Soybean	plastid	35.71	30.3
KRH38394	Soybean	plastid	29.29	29.5
VIT_04s0023g03470.t01	Wine grape	cytosol, plastid	39.29	27.36
PGSC0003DMT400009189	Potato	plastid	27.14	26.57
KRG99625	Soybean	plastid	24.29	25.76
KRH50148	Soybean	plastid	25.71	25.53
KRH20682	Soybean	plastid	25.0	25.36
KRH69779	Soybean	mitochondrion	29.29	20.1

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100285455	MapMan:35.2	ProteinID:AQK58955.1	EMBL:BT063673	UniProt:C0P5V4
InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	PFAM:PF00226
PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR44240	PANTHER:PTHR44240:SF2	SMART:SM00271
SUPFAM:SSF46565	UniParc:UPI0001948DEB	EnsemblPlantsGene:Zm00001d053213	EnsemblPlants:Zm00001d053213_P001	EnsemblPlants:Zm00001d053213_T001	SEG:seg

Description

Chaperone protein dnaJ 11 chloroplastic

Coordinates

chr4:+:220420178..220420600

Molecular Weight (calculated)

14876.8 Da

IEP (calculated)

11.276

GRAVY (calculated)

-0.189

Length

140 amino acids

Sequence
(BLAST)

001: MISAPLRLSA PRAAVGGSFL LGASKSKPSR IRCAAGVGRG AAAATLYEVL GLRAGATGRE IKAAYRRLAR ERHPDVATAP GAAAEFVRLH DAYATLSDPD
101: SRARYDRSAV AAVAVAQRPW RSGVGVYGRP LRTWETDQCW

Best Arabidopsis Sequence Match ( AT2G17880.1 )
(BLAST)

001: MLSSSPTFFA TPFLSSSSSS SPSFSSTSPP SRISRISPSL STTTASYTCA EDLPRLRQIP QRFSATASLY EILEIPVGST SQEIKSAYRR LARICHPDVA
101: RNSRDNSSAD DFMKIHAAYC TLSDPEKRAV YDRRTLLRSR PLTAGYGSYG GRNWETDQCW

Arabidopsis Description

At2g17880 [Source:UniProtKB/TrEMBL;Acc:O48828]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.