CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04275
KRH28216
KRH57556
KRH77271

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17880.1	KRH04275	AT4G17680.1	21798944
AT2G17880.1	KRH28216	AT4G17680.1	21798944
AT2G17880.1	KRH57556	AT4G17680.1	21798944
AT2G17880.1	KRH77271	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69778	Soybean	mitochondrion	31.37	62.75
KRH08066	Soybean	plastid	36.76	47.77
KRH24255	Soybean	cytosol	22.55	45.54
KRH29260	Soybean	cytosol	22.55	45.54
KRH08065	Soybean	plastid	32.35	40.0
KRH28802	Soybean	plastid	29.9	38.61
GSMUA_Achr1P18570_001	Banana	mitochondrion	26.47	38.57
KRH76655	Soybean	plastid	28.92	37.34
PGSC0003DMT400061357	Potato	plastid	26.47	35.29
VIT_03s0038g02110.t01	Wine grape	cytosol, nucleus, plastid	25.98	35.1
KRH38394	Soybean	plastid	23.53	34.53
KRG99625	Soybean	plastid	22.06	34.09
KRH50148	Soybean	plastid	23.53	34.04
GSMUA_Achr5P11400_001	Banana	plastid	25.49	33.77
CDX72573	Canola	plastid	26.47	33.54
Bra017744.1-P	Field mustard	plastid	26.47	33.54
AT2G17880.1	Thale cress	plastid	25.98	33.12
CDY30342	Canola	plastid	25.0	33.12
CDY29205	Canola	plastid	25.49	32.7
TraesCS7A01G271600.1	Wheat	plastid	22.06	31.91
TraesCS7B01G170400.1	Wheat	plastid	22.06	31.91
Solyc02g062160.1.1	Tomato	plastid	24.02	31.82
GSMUA_Achr3P12640_001	Banana	plastid	20.59	31.58
PGSC0003DMT400009189	Potato	plastid	22.06	31.47
TraesCS7D01G271900.1	Wheat	plastid	21.57	31.21
HORVU7Hr1G057330.1	Barley	plastid	21.57	31.21
Bra037247.1-P	Field mustard	plastid	23.53	31.17
GSMUA_Achr1P02450_001	Banana	plastid	22.55	31.08
CDY34072	Canola	plastid	24.51	31.06
TraesCS7B01G448500.1	Wheat	plastid	19.61	31.01
GSMUA_Achr5P18850_001	Banana	plastid	25.98	30.99
Bra040872.1-P	Field mustard	plastid	24.02	30.82
Bra011656.1-P	Field mustard	plastid	24.02	30.82
CDX75547	Canola	plastid	24.02	30.62
Zm00001d032030_P001	Maize	plastid	20.59	30.43
AT4G36040.1	Thale cress	plastid	24.02	30.43
CDY26834	Canola	plastid	23.53	30.38
VIT_04s0023g03470.t01	Wine grape	cytosol, plastid	29.9	30.35
CDX69193	Canola	plastid	24.02	30.25
Os06t0716100-01	Rice	plastid	19.61	30.08
Bra010502.1-P	Field mustard	plastid	23.53	29.81
CDY24828	Canola	plastid	23.53	29.81
KRH20682	Soybean	plastid	20.1	29.71
KXG25435	Sorghum	plastid	21.57	29.53
TraesCS7B01G446100.1	Wheat	mitochondrion, plastid	18.63	29.46
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	21.08	29.45
Zm00001d053213_P001	Maize	mitochondrion, plastid	20.1	29.29
CDY07811	Canola	plastid	23.04	29.01
TraesCS4D01G226900.1	Wheat	plastid	24.02	28.99
Zm00001d028404_P001	Maize	plastid	21.57	28.57
HORVU7Hr1G116890.2	Barley	plastid	19.61	28.57
Zm00001d014790_P001	Maize	plastid	18.14	28.46
TraesCS4B01G226300.1	Wheat	plastid	22.55	28.05
GSMUA_Achr8P19450_001	Banana	plastid	24.02	27.84
KRG98415	Soybean	plastid	20.59	27.81
EER92566	Sorghum	plastid	21.57	27.67
KRH14184	Soybean	mitochondrion, plastid	19.12	27.46
TraesCS7A01G528900.1	Wheat	plastid	18.63	27.34
HORVU7Hr1G116960.1	Barley	plastid	18.14	27.21
TraesCS7A01G529200.1	Wheat	plastid	18.63	27.14
TraesCS7D01G517000.1	Wheat	plastid	18.63	27.14
TraesCS7B01G446000.1	Wheat	plastid	17.16	27.13
TraesCS4A01G069100.1	Wheat	plastid	22.06	27.11
EER88964	Sorghum	plastid	18.14	27.01
TraesCS7B01G445600.1	Wheat	plastid	18.14	26.81
TraesCS7D01G516900.1	Wheat	plastid	18.14	26.62
TraesCS7A01G529000.1	Wheat	plastid	18.14	26.62
TraesCS7B01G445800.1	Wheat	plastid	18.14	26.43
TraesCS7D01G516700.1	Wheat	plastid	18.14	26.43
Os03t0244950-00	Rice	mitochondrion, nucleus, plastid	22.06	26.32
TraesCS7A01G529400.1	Wheat	plastid	16.67	26.15
Os08t0548400-00	Rice	plastid	18.63	26.03
TraesCS7B01G445700.1	Wheat	plastid	17.65	25.9
TraesCS7D01G516600.1	Wheat	plastid	17.65	25.9
TraesCS7A01G528700.1	Wheat	plastid	17.65	25.71
TraesCS3D01G308300.1	Wheat	plastid	17.16	25.55
HORVU4Hr1G063590.1	Barley	plastid	21.57	25.43
KRH46491	Soybean	plastid	19.12	25.0
TraesCS7B01G445500.1	Wheat	plastid	16.67	24.46
TraesCS7D01G516800.1	Wheat	plastid	16.18	23.57
TraesCS7B01G445900.1	Wheat	mitochondrion, plastid	17.65	23.53
TraesCS7A01G528800.1	Wheat	plastid	15.69	23.53
TraesCS4B01G226200.1	Wheat	plastid	18.63	21.23

Protein Annotations

EMBL:ACUP02000729	EnsemblPlants:KRH69779	EnsemblPlantsGene:GLYMA_02G048000	EntrezGene:100780051	Gene3D:1.10.287.110	InterPro:DnaJ_domain
InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR44240	PANTHER:PTHR44240:SF1	PFAM:PF00226
PFscan:PS50076	PRINTS:PR00625	ProteinID:KRH69779	ProteinID:KRH69779.1	SEG:seg	SMART:SM00271
SUPFAM:SSF46565	UniParc:UPI0002336F5B	UniProt:A0A0R0KYZ5	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr2:-:4407580..4408194

Molecular Weight (calculated)

22859.2 Da

IEP (calculated)

10.336

GRAVY (calculated)

-0.481

Length

204 amino acids

Sequence
(BLAST)

001: MCKRLVFHLN TNPNRAQSQK HSYGGTHTFS PFSLSLFIYE TQSSSKSKAS NNNDVSYHNM FTAHFPTFTA TLSGKRVSSP PRQVRFRLTV SFAIATCTEE
101: QRHKTASYLG PHHGMASCAM LYEILGIRAA ASGMEIKAAY RWLARMCHPD VAPMERKESS ASEFMKIHVA YCTLLDPEKR ASSDRSLFRR HQRPLTTTSS
201: GGSS

Best Arabidopsis Sequence Match ( AT4G36040.1 )
(BLAST)

001: MLSSSPTSFT HPFLSSSPPL SPISPPSRTA RISPPLVSAS CSYTYTEDSP RLHQIPRRLT TVPASLYDVL EVPLGATSQD IKSAYRRLAR ICHPDVAGTD
101: RTSSSSADEF MKIHAAYCTL SDPEKRSVYD RRMLRRSRPL TVGTSGLGSY VGRNWETDQC W

Arabidopsis Description

ATJ11At4g36040 [Source:UniProtKB/TrEMBL;Acc:Q1H544]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.