Factsheet for TraesCS7D01G516800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G215300.1
TraesCS1B01G228800.1
TraesCS1D01G217800.1
TraesCS6A01G262200.1
TraesCS6B01G289500.1
TraesCS6D01G243000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17880.1	TraesCS1A01G215300.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS1B01G228800.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS1D01G217800.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS6A01G262200.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS6B01G289500.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS6D01G243000.1	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G516600.1	Wheat	plastid	86.43	87.05
TraesCS7D01G516700.1	Wheat	plastid	85.0	85.0
TraesCS7B01G445500.1	Wheat	plastid	84.29	84.89
TraesCS7A01G528800.1	Wheat	plastid	81.43	83.82
TraesCS7D01G516900.1	Wheat	plastid	82.86	83.45
TraesCS3D01G308300.1	Wheat	plastid	80.0	81.75
HORVU7Hr1G116890.2	Barley	plastid	80.71	80.71
HORVU7Hr1G116960.1	Barley	plastid	77.14	79.41
TraesCS7D01G517000.1	Wheat	plastid	75.0	75.0
Os06t0716100-01	Rice	plastid	58.57	61.65
Zm00001d014790_P001	Maize	plastid	53.57	57.69
EER88964	Sorghum	plastid	52.86	54.01
TraesCS7D01G271900.1	Wheat	plastid	42.86	42.55
KRH69778	Soybean	mitochondrion	30.71	42.16
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	40.0	38.36
TraesCS4D01G226900.1	Wheat	plastid	42.86	35.5
KRH76655	Soybean	plastid	36.43	32.28
KRH28802	Soybean	plastid	36.43	32.28
TraesCS7D01G221800.1	Wheat	plastid	24.29	31.19
VIT_03s0038g02110.t01	Wine grape	cytosol, nucleus, plastid	33.57	31.13
KRH08066	Soybean	plastid	32.86	29.3
AT4G36040.1	Thale cress	plastid	33.57	29.19
KRH38394	Soybean	plastid	28.57	28.78
CDX75547	Canola	plastid	32.86	28.75
Solyc02g062160.1.1	Tomato	plastid	31.43	28.57
CDX69193	Canola	plastid	32.86	28.4
Bra011656.1-P	Field mustard	plastid	32.14	28.3
KRG99625	Soybean	plastid	25.71	27.27
KRH20682	Soybean	plastid	26.43	26.81
PGSC0003DMT400061357	Potato	plastid	29.29	26.8
Bra010502.1-P	Field mustard	plastid	30.71	26.71
Bra017744.1-P	Field mustard	plastid	30.71	26.71
CDX72573	Canola	plastid	30.71	26.71
CDY24828	Canola	plastid	30.71	26.71
CDY34072	Canola	plastid	30.0	26.09
CDY26834	Canola	plastid	29.29	25.95
Bra040872.1-P	Field mustard	plastid	28.57	25.16
AT2G17880.1	Thale cress	plastid	28.57	25.0
KRH08065	Soybean	plastid	29.29	24.85
CDY07811	Canola	plastid	28.57	24.69
Bra037247.1-P	Field mustard	plastid	27.14	24.68
CDY29205	Canola	plastid	27.86	24.53
CDY30342	Canola	plastid	26.43	24.03
PGSC0003DMT400009189	Potato	plastid	24.29	23.78
KRH50148	Soybean	plastid	22.86	22.7
VIT_04s0023g03470.t01	Wine grape	cytosol, plastid	27.86	19.4
KRH69779	Soybean	mitochondrion	23.57	16.18

Protein Annotations

EnsemblPlants:TraesCS7D01G516800.1	EnsemblPlantsGene:TraesCS7D01G516800	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR44240	PFAM:PF00226	PFscan:PS50076	PRINTS:PR00625
ScanProsite:PS00636	SEG:seg	SMART:SM00271	SUPFAM:SSF46565	TIGR:cd06257	MapMan:35.2

Description

No Description!

Coordinates

chr7D:+:616103088..616103806

Molecular Weight (calculated)

14807.5 Da

IEP (calculated)

10.385

GRAVY (calculated)

-0.316

Length

140 amino acids

Sequence
(BLAST)

001: MATFATSTAA VMGSARPGRV AGPRRCVVAR ASSTMAAPAA LATGRTHYDV LGVSAGASRG EIKAAYRRRA REVHPDAAGG VGDEGFIQLH AAYATLADPD
101: ERARYDSDMA CRAAGTMMMR RAGAAGPSFR RRTWETDQCW

Best Arabidopsis Sequence Match ( AT4G36040.1 )
(BLAST)

001: MLSSSPTSFT HPFLSSSPPL SPISPPSRTA RISPPLVSAS CSYTYTEDSP RLHQIPRRLT TVPASLYDVL EVPLGATSQD IKSAYRRLAR ICHPDVAGTD
101: RTSSSSADEF MKIHAAYCTL SDPEKRSVYD RRMLRRSRPL TVGTSGLGSY VGRNWETDQC W

Arabidopsis Description

ATJ11At4g36040 [Source:UniProtKB/TrEMBL;Acc:Q1H544]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.