Factsheet for TraesCS7D01G517000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G215300.1
TraesCS1B01G228800.1
TraesCS1D01G217800.1
TraesCS6A01G262200.1
TraesCS6B01G289500.1
TraesCS6D01G243000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17880.1	TraesCS1A01G215300.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS1B01G228800.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS1D01G217800.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS6A01G262200.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS6B01G289500.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS6D01G243000.1	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G529200.1	Wheat	plastid	87.86	87.86
TraesCS7B01G445800.1	Wheat	plastid	87.14	87.14
HORVU7Hr1G116960.1	Barley	plastid	80.71	83.09
TraesCS7D01G516900.1	Wheat	plastid	81.43	82.01
TraesCS7D01G516600.1	Wheat	plastid	80.71	81.3
TraesCS3D01G308300.1	Wheat	plastid	78.57	80.29
HORVU7Hr1G116890.2	Barley	plastid	79.29	79.29
TraesCS7D01G516700.1	Wheat	plastid	79.29	79.29
TraesCS7D01G516800.1	Wheat	plastid	75.0	75.0
Os06t0716100-01	Rice	plastid	55.0	57.89
Zm00001d014790_P001	Maize	plastid	52.14	56.15
EER88964	Sorghum	plastid	53.57	54.74
TraesCS7D01G271900.1	Wheat	plastid	47.86	47.52
KRH69778	Soybean	mitochondrion	31.43	43.14
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	40.71	39.04
TraesCS4D01G226900.1	Wheat	plastid	46.43	38.46
KRH28802	Soybean	plastid	35.71	31.65
TraesCS7D01G221800.1	Wheat	plastid	24.29	31.19
KRH76655	Soybean	plastid	35.0	31.01
VIT_03s0038g02110.t01	Wine grape	cytosol, nucleus, plastid	32.86	30.46
KRH08066	Soybean	plastid	32.86	29.3
Solyc02g062160.1.1	Tomato	plastid	32.14	29.22
KRH38394	Soybean	plastid	28.57	28.78
KRG99625	Soybean	plastid	26.43	28.03
AT4G36040.1	Thale cress	plastid	32.14	27.95
KRH08065	Soybean	plastid	32.86	27.88
CDX69193	Canola	plastid	32.14	27.78
Bra011656.1-P	Field mustard	plastid	31.43	27.67
PGSC0003DMT400061357	Potato	plastid	30.0	27.45
Bra017744.1-P	Field mustard	plastid	31.43	27.33
CDY30342	Canola	plastid	30.0	27.27
CDX75547	Canola	plastid	30.71	26.88
CDX72573	Canola	plastid	30.71	26.71
CDY26834	Canola	plastid	30.0	26.58
Bra040872.1-P	Field mustard	plastid	30.0	26.42
AT2G17880.1	Thale cress	plastid	30.0	26.25
Bra010502.1-P	Field mustard	plastid	30.0	26.09
CDY34072	Canola	plastid	30.0	26.09
CDY24828	Canola	plastid	30.0	26.09
Bra037247.1-P	Field mustard	plastid	28.57	25.97
CDY07811	Canola	plastid	29.29	25.31
CDY29205	Canola	plastid	28.57	25.16
KRH20682	Soybean	plastid	24.29	24.64
PGSC0003DMT400009189	Potato	plastid	25.0	24.48
KRH50148	Soybean	plastid	24.29	24.11
VIT_04s0023g03470.t01	Wine grape	cytosol, plastid	30.0	20.9
KRH69779	Soybean	mitochondrion	27.14	18.63

Protein Annotations

EnsemblPlants:TraesCS7D01G517000.1	EnsemblPlantsGene:TraesCS7D01G517000	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR44240	PANTHER:PTHR44240:SF2	PFAM:PF00226	PFscan:PS50076
PRINTS:PR00625	ScanProsite:PS00636	SEG:seg	SMART:SM00271	SUPFAM:SSF46565	TIGR:cd06257
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr7D:+:616174124..616174858

Molecular Weight (calculated)

15081.9 Da

IEP (calculated)

10.887

GRAVY (calculated)

-0.334

Length

140 amino acids

Sequence
(BLAST)

001: MAAAFASTPA VMWSARPERV AVARRCVVAR ASATMAAPAA LAAGKTHYDV LGLGAGASRG EIKAAYRRLA REVHPDAVGG GGDDGFIRLH TAYATLTDPD
101: ERARYDRDVT SRAAGMTMRR ASATTRPAFR RRTWETDQCW

Best Arabidopsis Sequence Match ( AT2G17880.1 )
(BLAST)

001: MLSSSPTFFA TPFLSSSSSS SPSFSSTSPP SRISRISPSL STTTASYTCA EDLPRLRQIP QRFSATASLY EILEIPVGST SQEIKSAYRR LARICHPDVA
101: RNSRDNSSAD DFMKIHAAYC TLSDPEKRAV YDRRTLLRSR PLTAGYGSYG GRNWETDQCW

Arabidopsis Description

At2g17880 [Source:UniProtKB/TrEMBL;Acc:O48828]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.