Factsheet for VIT_04s0023g03470.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 3
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g00290.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17880.1	VIT_02s0012g00290.t01	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69778	Soybean	mitochondrion	33.83	66.67
KRH28802	Soybean	plastid	39.8	50.63
KRH76655	Soybean	plastid	38.31	48.73
GSMUA_Achr1P18570_001	Banana	mitochondrion	33.33	47.86
Bra017744.1-P	Field mustard	plastid	37.31	46.58
CDX72573	Canola	plastid	36.32	45.34
KRH08066	Soybean	plastid	35.32	45.22
KRH08065	Soybean	plastid	36.32	44.24
Solyc02g062160.1.1	Tomato	plastid	33.83	44.16
CDY29205	Canola	plastid	34.83	44.03
CDX75547	Canola	plastid	34.83	43.75
CDX69193	Canola	plastid	34.83	43.21
KRH38394	Soybean	plastid	29.85	43.17
CDY30342	Canola	plastid	32.34	42.21
Bra040872.1-P	Field mustard	plastid	33.33	42.14
Bra011656.1-P	Field mustard	plastid	33.33	42.14
PGSC0003DMT400009189	Potato	plastid	29.85	41.96
PGSC0003DMT400061357	Potato	plastid	31.84	41.83
CDY26834	Canola	plastid	32.84	41.77
VIT_03s0038g02110.t01	Wine grape	cytosol, nucleus, plastid	31.34	41.72
AT4G36040.1	Thale cress	plastid	33.33	41.61
Bra037247.1-P	Field mustard	plastid	31.84	41.56
CDY07811	Canola	plastid	33.33	41.36
GSMUA_Achr3P12640_001	Banana	plastid	27.36	41.35
AT2G17880.1	Thale cress	plastid	32.84	41.25
KRH50148	Soybean	plastid	28.86	41.13
KRG99625	Soybean	plastid	26.87	40.91
GSMUA_Achr1P02450_001	Banana	plastid	29.35	39.86
CDY34072	Canola	plastid	31.84	39.75
CDY24828	Canola	plastid	31.84	39.75
Bra010502.1-P	Field mustard	plastid	31.84	39.75
GSMUA_Achr5P11400_001	Banana	plastid	30.35	39.61
Zm00001d053213_P001	Maize	mitochondrion, plastid	27.36	39.29
HORVU7Hr1G057330.1	Barley	plastid	26.87	38.3
TraesCS7B01G170400.1	Wheat	plastid	26.37	37.59
TraesCS7A01G271600.1	Wheat	plastid	26.37	37.59
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	26.87	36.99
Zm00001d032030_P001	Maize	plastid	25.37	36.96
KXG25435	Sorghum	plastid	27.36	36.91
TraesCS7D01G271900.1	Wheat	plastid	25.87	36.88
KRH20682	Soybean	plastid	24.88	36.23
Os08t0548400-00	Rice	plastid	25.87	35.62
GSMUA_Achr5P18850_001	Banana	plastid	29.85	35.09
Os06t0716100-01	Rice	plastid	22.89	34.59
Zm00001d028404_P001	Maize	plastid	26.37	34.42
VIT_18s0001g14440.t01	Wine grape	plastid	36.82	33.79
Zm00001d014790_P001	Maize	plastid	21.39	33.08
TraesCS7A01G529400.1	Wheat	plastid	21.39	33.08
EER92566	Sorghum	plastid	25.87	32.7
TraesCS7B01G446000.1	Wheat	plastid	20.9	32.56
TraesCS7A01G528900.1	Wheat	plastid	22.39	32.37
HORVU7Hr1G116890.2	Barley	plastid	22.39	32.14
TraesCS4D01G226900.1	Wheat	plastid	26.87	31.95
TraesCS7B01G448500.1	Wheat	plastid	20.4	31.78
TraesCS7B01G446100.1	Wheat	mitochondrion, plastid	20.4	31.78
EER88964	Sorghum	plastid	21.39	31.39
GSMUA_Achr8P19450_001	Banana	plastid	27.36	31.25
TraesCS7D01G516900.1	Wheat	plastid	21.39	30.94
TraesCS7A01G529000.1	Wheat	plastid	21.39	30.94
TraesCS7B01G445500.1	Wheat	plastid	21.39	30.94
TraesCS7B01G445700.1	Wheat	plastid	21.39	30.94
HORVU7Hr1G116960.1	Barley	plastid	20.9	30.88
TraesCS7B01G445800.1	Wheat	plastid	21.39	30.71
TraesCS7A01G528700.1	Wheat	plastid	21.39	30.71
TraesCS7D01G516700.1	Wheat	plastid	21.39	30.71
TraesCS4B01G226300.1	Wheat	plastid	24.88	30.49
Os03t0244950-00	Rice	mitochondrion, nucleus, plastid	25.87	30.41
TraesCS7D01G516600.1	Wheat	plastid	20.9	30.22
TraesCS7A01G529200.1	Wheat	plastid	20.9	30.0
TraesCS7D01G517000.1	Wheat	plastid	20.9	30.0
KRH69779	Soybean	mitochondrion	30.35	29.9
VIT_19s0015g01370.t01	Wine grape	plastid	21.89	29.73
TraesCS7B01G445600.1	Wheat	plastid	20.4	29.71
TraesCS4A01G069100.1	Wheat	plastid	24.38	29.52
TraesCS7A01G528800.1	Wheat	plastid	19.9	29.41
TraesCS3D01G308300.1	Wheat	plastid	19.9	29.2
HORVU4Hr1G063590.1	Barley	plastid	24.88	28.9
TraesCS7D01G516800.1	Wheat	plastid	19.4	27.86
TraesCS4B01G226200.1	Wheat	plastid	24.38	27.37
TraesCS7B01G445900.1	Wheat	mitochondrion, plastid	18.91	24.84

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100247204	wikigene:100247204	MapMan:35.1	ProteinID:CCB44361	ProteinID:CCB44361.1
InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	UniProt:F6GWM6	EMBL:FN594959	InterPro:IPR001623	InterPro:IPR036869
InterPro:J_dom_sf	EntrezGene:LOC100247204	wikigene:LOC100247204	PFAM:PF00226	PRINTS:PR00625	ScanProsite:PS00636
PFscan:PS50076	PANTHER:PTHR44240	PANTHER:PTHR44240:SF3	SMART:SM00271	SUPFAM:SSF46565	TIGR:TC54237
UniParc:UPI0002108C3F	ArrayExpress:VIT_04s0023g03470	EnsemblPlantsGene:VIT_04s0023g03470	EnsemblPlants:VIT_04s0023g03470.t01	unigene:Vvi.703	RefSeq:XP_002265844
RefSeq:XP_002265844.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:+:20028906..20029894

Molecular Weight (calculated)

22503.4 Da

IEP (calculated)

8.941

GRAVY (calculated)

-0.548

Length

201 amino acids

Sequence
(BLAST)

001: MDKQFADSAA QQHPTVPPDK HFQPTSPPLS HHNFLTHCIM LSASSPSFLR PSPRFTGRAF SPAPPRVSYR QPCVSAVYTS TERARPSYLS LAETASCASL
101: YEILGIRMGA TSQEIKSAYR KLARVCHPDV AAISRKDSSA DEFMRIHAAY STLSDPEKRA DYDRSLFMRQ QPIESYAGIS SPTMSGFSGY TRRNWETDQC
201: W

Best Arabidopsis Sequence Match ( AT2G17880.1 )
(BLAST)

001: MLSSSPTFFA TPFLSSSSSS SPSFSSTSPP SRISRISPSL STTTASYTCA EDLPRLRQIP QRFSATASLY EILEIPVGST SQEIKSAYRR LARICHPDVA
101: RNSRDNSSAD DFMKIHAAYC TLSDPEKRAV YDRRTLLRSR PLTAGYGSYG GRNWETDQCW

Arabidopsis Description

At2g17880 [Source:UniProtKB/TrEMBL;Acc:O48828]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.