Factsheet for TraesCS7B01G445900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G215300.1
TraesCS1B01G228800.1
TraesCS1D01G217800.1
TraesCS6A01G262200.1
TraesCS6B01G289500.1
TraesCS6D01G243000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17880.1	TraesCS1A01G215300.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS1B01G228800.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS1D01G217800.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS6A01G262200.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS6B01G289500.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS6D01G243000.1	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G529400.1	Wheat	plastid	60.13	70.77
EER88964	Sorghum	plastid	41.83	46.72
TraesCS7B01G446100.1	Wheat	mitochondrion, plastid	39.22	46.51
Zm00001d014790_P001	Maize	plastid	39.22	46.15
TraesCS7B01G445500.1	Wheat	plastid	41.83	46.04
TraesCS7B01G446000.1	Wheat	plastid	38.56	45.74
TraesCS7B01G445600.1	Wheat	plastid	40.52	44.93
TraesCS7B01G445700.1	Wheat	plastid	40.52	44.6
TraesCS7B01G445800.1	Wheat	plastid	40.52	44.29
TraesCS7B01G448500.1	Wheat	plastid	37.25	44.19
Os06t0716100-01	Rice	plastid	36.6	42.11
KRH69778	Soybean	mitochondrion	24.84	37.25
TraesCS7B01G127100.1	Wheat	cytosol, mitochondrion	22.88	35.35
TraesCS7B01G170400.1	Wheat	plastid	30.07	32.62
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	29.41	30.82
TraesCS4B01G226300.1	Wheat	plastid	30.72	28.66
KRH76655	Soybean	plastid	28.76	27.85
Solyc02g062160.1.1	Tomato	plastid	26.8	26.62
KRH28802	Soybean	plastid	27.45	26.58
VIT_03s0038g02110.t01	Wine grape	cytosol, nucleus, plastid	25.49	25.83
TraesCS4B01G226200.1	Wheat	plastid	30.07	25.7
KRH08066	Soybean	plastid	26.14	25.48
KRH38394	Soybean	plastid	21.57	23.74
Bra017744.1-P	Field mustard	plastid	24.84	23.6
KRH08065	Soybean	plastid	24.84	23.03
AT4G36040.1	Thale cress	plastid	24.18	22.98
CDX69193	Canola	plastid	24.18	22.84
CDY26834	Canola	plastid	23.53	22.78
CDY30342	Canola	plastid	22.88	22.73
Bra011656.1-P	Field mustard	plastid	23.53	22.64
AT2G17880.1	Thale cress	plastid	23.53	22.5
CDY24828	Canola	plastid	23.53	22.36
Bra010502.1-P	Field mustard	plastid	23.53	22.36
CDX72573	Canola	plastid	23.53	22.36
CDY34072	Canola	plastid	23.53	22.36
PGSC0003DMT400061357	Potato	plastid	22.22	22.22
Bra037247.1-P	Field mustard	plastid	22.22	22.08
Bra040872.1-P	Field mustard	plastid	22.88	22.01
KRG99625	Soybean	plastid	18.95	21.97
CDX75547	Canola	plastid	22.88	21.88
CDY29205	Canola	plastid	22.22	21.38
CDY07811	Canola	plastid	22.22	20.99
KRH50148	Soybean	plastid	18.95	20.57
VIT_04s0023g03470.t01	Wine grape	cytosol, plastid	24.84	18.91
KRH20682	Soybean	plastid	16.99	18.84
PGSC0003DMT400009189	Potato	plastid	16.99	18.18
KRH69779	Soybean	mitochondrion	23.53	17.65

Protein Annotations

EnsemblPlants:TraesCS7B01G445900.1	EnsemblPlantsGene:TraesCS7B01G445900	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:IPR001623	InterPro:IPR036869
InterPro:J_dom_sf	PANTHER:PTHR44240	PFAM:PF00226	PFscan:PS50076	PRINTS:PR00625	SEG:seg
SMART:SM00271	SUPFAM:SSF46565	TIGR:cd06257	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr7B:+:709430148..709430609

Molecular Weight (calculated)

16262.6 Da

IEP (calculated)

12.535

GRAVY (calculated)

-0.393

Length

153 amino acids

Sequence
(BLAST)

001: MAAFAAVTMP LPGRVSGSRW RVVARASATM AAPAGRTHYE VLGVGAWASS GEIKAAYRRL AREVHPDAVG GVDGEGFIRL RAAYATLANP DERALRPGRG
101: WPRRGRLGRR GLRSGRGRGR RISAGRTAGH THALLSRSPG RRPFGAACKS IQA

Best Arabidopsis Sequence Match ( AT2G17880.1 )
(BLAST)

001: MLSSSPTFFA TPFLSSSSSS SPSFSSTSPP SRISRISPSL STTTASYTCA EDLPRLRQIP QRFSATASLY EILEIPVGST SQEIKSAYRR LARICHPDVA
101: RNSRDNSSAD DFMKIHAAYC TLSDPEKRAV YDRRTLLRSR PLTAGYGSYG GRNWETDQCW

Arabidopsis Description

At2g17880 [Source:UniProtKB/TrEMBL;Acc:O48828]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.