Factsheet for TraesCS4B01G226300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G215300.1
TraesCS1B01G228800.1
TraesCS1D01G217800.1
TraesCS6A01G262200.1
TraesCS6B01G289500.1
TraesCS6D01G243000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17880.1	TraesCS1A01G215300.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS1B01G228800.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS1D01G217800.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS6A01G262200.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS6B01G289500.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS6D01G243000.1	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G063590.1	Barley	plastid	74.39	70.52
TraesCS4A01G069100.1	Wheat	plastid	68.9	68.07
TraesCS4D01G226900.1	Wheat	plastid	64.02	62.13
TraesCS4B01G226200.1	Wheat	plastid	58.54	53.63
Zm00001d028404_P001	Maize	plastid	46.34	49.35
Os03t0244950-00	Rice	mitochondrion, nucleus, plastid	47.56	45.61
KRH69778	Soybean	mitochondrion	28.05	45.1
EER92566	Sorghum	plastid	43.29	44.65
TraesCS7B01G445600.1	Wheat	plastid	37.2	44.2
TraesCS7B01G445500.1	Wheat	plastid	37.2	43.88
TraesCS7B01G445800.1	Wheat	plastid	37.2	43.57
TraesCS7B01G446100.1	Wheat	mitochondrion, plastid	34.15	43.41
TraesCS7B01G448500.1	Wheat	plastid	34.15	43.41
GSMUA_Achr1P02450_001	Banana	plastid	39.02	43.24
TraesCS7B01G445700.1	Wheat	plastid	35.98	42.45
TraesCS7B01G446000.1	Wheat	plastid	32.93	41.86
TraesCS7B01G170400.1	Wheat	plastid	35.98	41.84
GSMUA_Achr5P18850_001	Banana	plastid	37.8	36.26
Bra040872.1-P	Field mustard	plastid	34.76	35.85
CDX69193	Canola	plastid	35.37	35.8
AT4G36040.1	Thale cress	plastid	34.76	35.4
GSMUA_Achr8P19450_001	Banana	plastid	37.8	35.23
Bra011656.1-P	Field mustard	plastid	34.15	35.22
Bra037247.1-P	Field mustard	plastid	32.93	35.06
CDY30342	Canola	plastid	32.93	35.06
AT2G17880.1	Thale cress	plastid	34.15	35.0
KRH28802	Soybean	plastid	33.54	34.81
KRH76655	Soybean	plastid	33.54	34.81
CDY29205	Canola	plastid	33.54	34.59
GSMUA_Achr5P11400_001	Banana	plastid	32.32	34.42
CDX75547	Canola	plastid	32.93	33.75
CDY26834	Canola	plastid	32.32	33.54
Bra010502.1-P	Field mustard	plastid	32.93	33.54
Bra017744.1-P	Field mustard	plastid	32.93	33.54
CDX72573	Canola	plastid	32.93	33.54
CDY24828	Canola	plastid	32.93	33.54
KRH08066	Soybean	plastid	31.1	32.48
VIT_03s0038g02110.t01	Wine grape	cytosol, nucleus, plastid	29.88	32.45
KRH38394	Soybean	plastid	27.44	32.37
CDY34072	Canola	plastid	31.71	32.3
CDY07811	Canola	plastid	31.71	32.1
KRG99625	Soybean	plastid	25.61	31.82
TraesCS7B01G127100.1	Wheat	cytosol, mitochondrion	18.9	31.31
TraesCS7B01G445900.1	Wheat	mitochondrion, plastid	28.66	30.72
PGSC0003DMT400061357	Potato	plastid	28.66	30.72
Solyc02g062160.1.1	Tomato	plastid	28.66	30.52
KRH20682	Soybean	plastid	25.61	30.43
KRH50148	Soybean	plastid	25.61	29.79
KRH08065	Soybean	plastid	29.27	29.09
PGSC0003DMT400009189	Potato	plastid	24.39	27.97
VIT_04s0023g03470.t01	Wine grape	cytosol, plastid	30.49	24.88
KRH69779	Soybean	mitochondrion	28.05	22.55

Protein Annotations

EnsemblPlants:TraesCS4B01G226300.1	EnsemblPlantsGene:TraesCS4B01G226300	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR44240	PANTHER:PTHR44240:SF4	PFAM:PF00226	PFscan:PS50076
PRINTS:PR00625	ScanProsite:PS00636	SEG:seg	SMART:SM00271	SUPFAM:SSF46565	TIGR:cd06257
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr4B:+:472672064..472672558

Molecular Weight (calculated)

17457.6 Da

IEP (calculated)

10.310

GRAVY (calculated)

-0.307

Length

164 amino acids

Sequence
(BLAST)

001: MISPRPTLSS GFFSRSASFS RPASFSPSPP ASPAAQAPPP LLSAPFARPA TLSCSAVAAP GRGASSCLYD VLGLDAGASD GEIKAAYRRL ARAVHPDVSP
101: HPADDFIRVH AAYSTLSDPS KRADYDRRMI MIPSAVGRRS APNLARSPSF PGCRRRTWET DQCW

Best Arabidopsis Sequence Match ( AT2G17880.1 )
(BLAST)

001: MLSSSPTFFA TPFLSSSSSS SPSFSSTSPP SRISRISPSL STTTASYTCA EDLPRLRQIP QRFSATASLY EILEIPVGST SQEIKSAYRR LARICHPDVA
101: RNSRDNSSAD DFMKIHAAYC TLSDPEKRAV YDRRTLLRSR PLTAGYGSYG GRNWETDQCW

Arabidopsis Description

At2g17880 [Source:UniProtKB/TrEMBL;Acc:O48828]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.