Factsheet for GSMUA_Achr8P19450_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
endoplasmic reticulum 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P00560_001
GSMUA_Achr2P12040_001
GSMUA_Achr2P18250_001
GSMUA_Achr4P21690_001
GSMUA_Achr4P30100_001
GSMUA_Achr8P14860_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17880.1	GSMUA_Achr1P00560_001	AT4G17680.1	21798944
AT2G17880.1	GSMUA_Achr2P12040_001	AT4G17680.1	21798944
AT2G17880.1	GSMUA_Achr2P18250_001	AT4G17680.1	21798944
AT2G17880.1	GSMUA_Achr4P21690_001	AT4G17680.1	21798944
AT2G17880.1	GSMUA_Achr4P30100_001	AT4G17680.1	21798944
AT2G17880.1	GSMUA_Achr8P14860_001	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P18850_001	Banana	plastid	56.82	58.48
KRH69778	Soybean	mitochondrion	30.68	52.94
GSMUA_Achr5P11400_001	Banana	plastid	42.61	48.7
GSMUA_Achr1P02450_001	Banana	plastid	40.91	48.65
GSMUA_Achr3P12640_001	Banana	plastid	34.09	45.11
GSMUA_Achr1P18570_001	Banana	mitochondrion	34.66	43.57
Zm00001d028404_P001	Maize	plastid	36.93	42.21
KRH28802	Soybean	plastid	36.93	41.14
EER92566	Sorghum	plastid	36.93	40.88
KRH76655	Soybean	plastid	35.8	39.87
PGSC0003DMT400061357	Potato	plastid	34.09	39.22
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	31.82	38.36
CDY30342	Canola	plastid	33.52	38.31
KRH08066	Soybean	plastid	34.09	38.22
AT2G17880.1	Thale cress	plastid	34.66	38.12
TraesCS4B01G226300.1	Wheat	plastid	35.23	37.8
VIT_03s0038g02110.t01	Wine grape	cytosol, nucleus, plastid	32.39	37.75
Bra037247.1-P	Field mustard	plastid	32.95	37.66
HORVU4Hr1G063590.1	Barley	plastid	36.93	37.57
TraesCS4A01G069100.1	Wheat	plastid	34.66	36.75
TraesCS4D01G226900.1	Wheat	plastid	35.23	36.69
CDX72573	Canola	plastid	32.95	36.02
Bra040872.1-P	Field mustard	plastid	31.82	35.22
KRH50148	Soybean	plastid	27.84	34.75
CDX75547	Canola	plastid	31.25	34.38
AT4G36040.1	Thale cress	plastid	31.25	34.16
Bra010502.1-P	Field mustard	plastid	31.25	34.16
Bra017744.1-P	Field mustard	plastid	31.25	34.16
CDY24828	Canola	plastid	31.25	34.16
CDY34072	Canola	plastid	31.25	34.16
KRG99625	Soybean	plastid	25.57	34.09
CDY29205	Canola	plastid	30.68	33.96
CDX69193	Canola	plastid	31.25	33.95
CDY26834	Canola	plastid	30.11	33.54
Os03t0244950-00	Rice	mitochondrion, nucleus, plastid	32.39	33.33
Bra011656.1-P	Field mustard	plastid	30.11	33.33
KRH20682	Soybean	plastid	26.14	33.33
KRH38394	Soybean	plastid	26.14	33.09
CDY07811	Canola	plastid	30.11	32.72
GSMUA_Achr4P01700_001	Banana	plastid	21.59	29.46
Solyc02g062160.1.1	Tomato	plastid	25.57	29.22
KRH08065	Soybean	plastid	27.27	29.09
TraesCS4B01G226200.1	Wheat	plastid	29.55	29.05
GSMUA_Achr9P19770_001	Banana	plastid	20.45	28.35
PGSC0003DMT400009189	Potato	plastid	22.73	27.97
VIT_04s0023g03470.t01	Wine grape	cytosol, plastid	31.25	27.36
KRH69779	Soybean	mitochondrion	27.84	24.02

Protein Annotations

EnsemblPlants:GSMUA_Achr8P19450_001	EnsemblPlants:GSMUA_Achr8T19450_001	EnsemblPlantsGene:GSMUA_Achr8G19450_001	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS
InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR44240	PFAM:PF00226	PFscan:PS50076
PRINTS:PR00625	ScanProsite:PS00636	SEG:seg	SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI000295A478
UniProt:M0TRU8	MapMan:35.1	:	:	:	:

Description

Putative Chaperone protein dnaJ 11, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr8G19450_001]

Coordinates

chr8:+:24720023..24720807

Molecular Weight (calculated)

18620.7 Da

IEP (calculated)

9.373

GRAVY (calculated)

-0.351

Length

176 amino acids

Sequence
(BLAST)

001: MSPPSSFASS QFLGLLVTPP PRSSAASLSP PSPSTLRSSG VSAAYAGAAE RARAASLSPS SSSLYDTLGV SPGASGQEIK TSYRRLALEC HPDVVATGRR
101: GASADEFMRV HAAYATLSDP VKRAYYDREL TAAAAILVHH RRSEPAPSPS PSPLAYARCT SYPGYGRRTW ETDQCW

Best Arabidopsis Sequence Match ( AT2G17880.1 )
(BLAST)

001: MLSSSPTFFA TPFLSSSSSS SPSFSSTSPP SRISRISPSL STTTASYTCA EDLPRLRQIP QRFSATASLY EILEIPVGST SQEIKSAYRR LARICHPDVA
101: RNSRDNSSAD DFMKIHAAYC TLSDPEKRAV YDRRTLLRSR PLTAGYGSYG GRNWETDQCW

Arabidopsis Description

At2g17880 [Source:UniProtKB/TrEMBL;Acc:O48828]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.