Factsheet for GSMUA_Achr5P11400_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P00560_001
GSMUA_Achr2P12040_001
GSMUA_Achr2P18250_001
GSMUA_Achr4P21690_001
GSMUA_Achr4P30100_001
GSMUA_Achr8P14860_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17880.1	GSMUA_Achr1P00560_001	AT4G17680.1	21798944
AT2G17880.1	GSMUA_Achr2P12040_001	AT4G17680.1	21798944
AT2G17880.1	GSMUA_Achr2P18250_001	AT4G17680.1	21798944
AT2G17880.1	GSMUA_Achr4P21690_001	AT4G17680.1	21798944
AT2G17880.1	GSMUA_Achr4P30100_001	AT4G17680.1	21798944
AT2G17880.1	GSMUA_Achr8P14860_001	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69778	Soybean	mitochondrion	35.06	52.94
GSMUA_Achr1P18570_001	Banana	mitochondrion	45.45	50.0
GSMUA_Achr5P18850_001	Banana	plastid	51.95	46.78
GSMUA_Achr3P12640_001	Banana	plastid	37.66	43.61
GSMUA_Achr8P19450_001	Banana	plastid	48.7	42.61
GSMUA_Achr1P02450_001	Banana	plastid	40.91	42.57
KRH76655	Soybean	plastid	42.86	41.77
KRH28802	Soybean	plastid	42.21	41.14
VIT_03s0038g02110.t01	Wine grape	cytosol, nucleus, plastid	38.31	39.07
EER92566	Sorghum	plastid	40.26	38.99
Zm00001d028404_P001	Maize	plastid	38.96	38.96
KRH08066	Soybean	plastid	38.31	37.58
GSMUA_Achr4P01700_001	Banana	plastid	30.52	36.43
CDY30342	Canola	plastid	36.36	36.36
AT4G36040.1	Thale cress	plastid	37.66	36.02
Solyc02g062160.1.1	Tomato	plastid	35.71	35.71
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	33.77	35.62
CDX72573	Canola	plastid	37.01	35.4
CDY34072	Canola	plastid	37.01	35.4
CDY24828	Canola	plastid	36.36	34.78
Bra010502.1-P	Field mustard	plastid	36.36	34.78
Bra017744.1-P	Field mustard	plastid	36.36	34.78
GSMUA_Achr9P19770_001	Banana	plastid	28.57	34.65
PGSC0003DMT400061357	Potato	plastid	34.42	34.64
CDX69193	Canola	plastid	36.36	34.57
Bra037247.1-P	Field mustard	plastid	34.42	34.42
AT2G17880.1	Thale cress	plastid	35.71	34.38
CDX75547	Canola	plastid	35.71	34.38
CDY26834	Canola	plastid	35.06	34.18
Bra011656.1-P	Field mustard	plastid	35.06	33.96
KRH38394	Soybean	plastid	29.87	33.09
TraesCS4B01G226300.1	Wheat	plastid	34.42	32.32
Os03t0244950-00	Rice	mitochondrion, nucleus, plastid	35.71	32.16
Bra040872.1-P	Field mustard	plastid	33.12	32.08
CDY29205	Canola	plastid	33.12	32.08
TraesCS4D01G226900.1	Wheat	plastid	35.06	31.95
HORVU4Hr1G063590.1	Barley	plastid	35.71	31.79
CDY07811	Canola	plastid	32.47	30.86
KRH50148	Soybean	plastid	27.92	30.5
VIT_04s0023g03470.t01	Wine grape	cytosol, plastid	39.61	30.35
KRH08065	Soybean	plastid	32.47	30.3
TraesCS4A01G069100.1	Wheat	plastid	31.17	28.92
KRG99625	Soybean	plastid	24.68	28.79
KRH20682	Soybean	plastid	25.32	28.26
TraesCS4B01G226200.1	Wheat	plastid	32.47	27.93
PGSC0003DMT400009189	Potato	plastid	24.03	25.87
KRH69779	Soybean	mitochondrion	33.77	25.49

Protein Annotations

EnsemblPlants:GSMUA_Achr5P11400_001	EnsemblPlants:GSMUA_Achr5T11400_001	EnsemblPlantsGene:GSMUA_Achr5G11400_001	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR44240	PFAM:PF00226	PFscan:PS50076	PRINTS:PR00625
SEG:seg	SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI000296AD97	UniProt:M0SXL9	MapMan:35.1

Description

Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G11400_001]

Coordinates

chr5:+:8169965..8170429

Molecular Weight (calculated)

16749.9 Da

IEP (calculated)

10.034

GRAVY (calculated)

-0.356

Length

154 amino acids

Sequence
(BLAST)

001: MLSPHPLPSS QFLGPRVAPP PRQVAAAILS PRSPPVAAVL RSPGVSNPSL EVPTSLYEVL GVPAWASGRE IKAAYRGLAL KCHPDVGASA EEFMRVQAAY
101: CTLSDPQQRA DYDRQLMASS AAAAPLGRRY RSTYSRTASF PGNRRRTWET DQCW

Best Arabidopsis Sequence Match ( AT4G36040.1 )
(BLAST)

001: MLSSSPTSFT HPFLSSSPPL SPISPPSRTA RISPPLVSAS CSYTYTEDSP RLHQIPRRLT TVPASLYDVL EVPLGATSQD IKSAYRRLAR ICHPDVAGTD
101: RTSSSSADEF MKIHAAYCTL SDPEKRSVYD RRMLRRSRPL TVGTSGLGSY VGRNWETDQC W

Arabidopsis Description

ATJ11At4g36040 [Source:UniProtKB/TrEMBL;Acc:Q1H544]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.