Factsheet for Bra040872.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012650.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17880.1	Bra012650.1-P	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29205	Canola	plastid	84.28	84.28
CDY07811	Canola	plastid	81.76	80.25
AT2G17880.1	Thale cress	plastid	72.33	71.88
Bra037247.1-P	Field mustard	plastid	69.18	71.43
Bra011656.1-P	Field mustard	plastid	64.15	64.15
Bra017744.1-P	Field mustard	plastid	60.38	59.63
Bra010502.1-P	Field mustard	plastid	59.75	59.01
KRH69778	Soybean	mitochondrion	35.22	54.9
KRH28802	Soybean	plastid	41.51	41.77
KRH76655	Soybean	plastid	40.25	40.51
KRG99625	Soybean	plastid	32.08	38.64
GSMUA_Achr1P18570_001	Banana	mitochondrion	33.96	38.57
Solyc02g062160.1.1	Tomato	plastid	37.11	38.31
KRH08066	Soybean	plastid	37.74	38.22
VIT_03s0038g02110.t01	Wine grape	cytosol, nucleus, plastid	35.22	37.09
KRH20682	Soybean	plastid	31.45	36.23
TraesCS7B01G170400.1	Wheat	plastid	32.08	36.17
TraesCS7D01G271900.1	Wheat	plastid	32.08	36.17
HORVU7Hr1G057330.1	Barley	plastid	32.08	36.17
KRH38394	Soybean	plastid	31.45	35.97
KRH08065	Soybean	plastid	37.11	35.76
Zm00001d053213_P001	Maize	mitochondrion, plastid	31.45	35.71
TraesCS7A01G271600.1	Wheat	plastid	31.45	35.46
GSMUA_Achr3P12640_001	Banana	plastid	29.56	35.34
PGSC0003DMT400061357	Potato	plastid	33.96	35.29
GSMUA_Achr1P02450_001	Banana	plastid	32.7	35.14
TraesCS4B01G226300.1	Wheat	plastid	35.85	34.76
KRH50148	Soybean	plastid	30.82	34.75
Os06t0716100-01	Rice	plastid	28.3	33.83
GSMUA_Achr5P18850_001	Banana	plastid	35.85	33.33
VIT_04s0023g03470.t01	Wine grape	cytosol, plastid	42.14	33.33
TraesCS4D01G226900.1	Wheat	plastid	35.22	33.14
GSMUA_Achr5P11400_001	Banana	plastid	32.08	33.12
Zm00001d014790_P001	Maize	plastid	27.04	33.08
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	30.19	32.88
PGSC0003DMT400009189	Potato	plastid	29.56	32.87
Zm00001d032030_P001	Maize	plastid	28.3	32.61
TraesCS4A01G069100.1	Wheat	plastid	33.33	31.93
TraesCS7B01G445600.1	Wheat	plastid	27.67	31.88
GSMUA_Achr8P19450_001	Banana	plastid	35.22	31.82
HORVU7Hr1G116960.1	Barley	plastid	27.04	31.62
TraesCS7A01G529400.1	Wheat	plastid	25.79	31.54
Os08t0548400-00	Rice	plastid	28.93	31.51
Zm00001d028404_P001	Maize	plastid	30.19	31.17
KXG25435	Sorghum	plastid	28.93	30.87
EER92566	Sorghum	plastid	30.82	30.82
Os03t0244950-00	Rice	mitochondrion, nucleus, plastid	32.7	30.41
TraesCS7D01G516600.1	Wheat	plastid	26.42	30.22
TraesCS7B01G445700.1	Wheat	plastid	26.42	30.22
TraesCS7B01G445500.1	Wheat	plastid	26.42	30.22
TraesCS7D01G516900.1	Wheat	plastid	26.42	30.22
TraesCS7A01G529000.1	Wheat	plastid	26.42	30.22
TraesCS7A01G528900.1	Wheat	plastid	26.42	30.22
HORVU7Hr1G116890.2	Barley	plastid	26.42	30.0
TraesCS7D01G517000.1	Wheat	plastid	26.42	30.0
TraesCS7B01G445800.1	Wheat	plastid	26.42	30.0
TraesCS7A01G528700.1	Wheat	plastid	26.42	30.0
HORVU4Hr1G063590.1	Barley	plastid	32.08	29.48
TraesCS7B01G446100.1	Wheat	mitochondrion, plastid	23.9	29.46
TraesCS7B01G448500.1	Wheat	plastid	23.9	29.46
TraesCS7A01G529200.1	Wheat	plastid	25.79	29.29
TraesCS7D01G516700.1	Wheat	plastid	25.79	29.29
EER88964	Sorghum	plastid	25.16	29.2
TraesCS3D01G308300.1	Wheat	plastid	25.16	29.2
TraesCS7A01G528800.1	Wheat	plastid	24.53	28.68
TraesCS7D01G516800.1	Wheat	plastid	25.16	28.57
Bra034691.1-P	Field mustard	plastid	28.3	28.3
Bra039384.1-P	Field mustard	plastid	27.67	28.03
Bra001497.1-P	Field mustard	plastid	27.67	27.85
TraesCS7B01G446000.1	Wheat	plastid	22.01	27.13
TraesCS4B01G226200.1	Wheat	plastid	30.19	26.82
KRH69779	Soybean	mitochondrion	30.82	24.02
TraesCS7B01G445900.1	Wheat	mitochondrion, plastid	22.01	22.88

Protein Annotations

EnsemblPlants:Bra040872.1	EnsemblPlants:Bra040872.1-P	EnsemblPlantsGene:Bra040872	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR44240	PANTHER:PTHR44240:SF1	PFAM:PF00226	PFscan:PS50076
PRINTS:PR00625	SEG:seg	SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI000253E9D7	UniProt:M4FIE3
MapMan:35.1	:	:	:	:	:

Description

AT2G17880 (E=8e-052) | DNAJ heat shock protein, putative

Coordinates

chrScaffold000289:-:33627..34106

Molecular Weight (calculated)

17326.5 Da

IEP (calculated)

9.051

GRAVY (calculated)

-0.330

Length

159 amino acids

Sequence
(BLAST)

001: MLSSSPTFFS PPLLSSSSPP FSAVPPPPRT SQISLSATTA SSYTCAEEPP RLRQIPQRLS ATPSLYEILE IPVGSTSQVI KSAYRRLARI CHPDVAGNDR
101: KCSSADAFTK IHAAYCTLSD PEKRAVYDRK ILCGRRPLTV GVSRFGSYGG GNWETDQCW

Best Arabidopsis Sequence Match ( AT2G17880.1 )
(BLAST)

001: MLSSSPTFFA TPFLSSSSSS SPSFSSTSPP SRISRISPSL STTTASYTCA EDLPRLRQIP QRFSATASLY EILEIPVGST SQEIKSAYRR LARICHPDVA
101: RNSRDNSSAD DFMKIHAAYC TLSDPEKRAV YDRRTLLRSR PLTAGYGSYG GRNWETDQCW

Arabidopsis Description

At2g17880 [Source:UniProtKB/TrEMBL;Acc:O48828]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.