Factsheet for VIT_18s0001g14440.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 2
nucleus 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0038g02110.t01	Wine grape	cytosol, nucleus, plastid	31.51	45.7
Solyc04g081530.1.1	Tomato	plastid	29.68	41.94
PGSC0003DMT400025543	Potato	plastid	29.22	41.03
VIT_04s0023g03470.t01	Wine grape	cytosol, plastid	33.79	36.82
VIT_19s0015g01370.t01	Wine grape	plastid	22.37	33.11

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100243742	wikigene:100243742	MapMan:35.1	ProteinID:CCB46044	ProteinID:CCB46044.1
InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	UniProt:F6H1L6	EMBL:FN595227	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0016740	GO:GO:0032259	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	EntrezGene:LOC100243742
wikigene:LOC100243742	PFAM:PF00226	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR44240
PANTHER:PTHR44240:SF3	SMART:SM00271	SUPFAM:SSF46565	TIGR:TC53183	UniParc:UPI000210A05E	ArrayExpress:VIT_18s0001g14440
EnsemblPlantsGene:VIT_18s0001g14440	EnsemblPlants:VIT_18s0001g14440.t01	unigene:Vvi.12234	RefSeq:XP_002274505	RefSeq:XP_002274505.1	SEG:seg

Description

No Description!

Coordinates

chr18:+:12432955..12439459

Molecular Weight (calculated)

24130.6 Da

IEP (calculated)

10.480

GRAVY (calculated)

-0.298

Length

219 amino acids

Sequence
(BLAST)

001: MESARKWNSL NPTILTIVKP QPQYFYKLAS SFQSSGLSIP SAAIAAIQTK HQITMFSAAP FSSSHFVVPK VAVNQRASPP TYVRFRQPKV SASYTATAER
101: TMSHIANPAS LYDVLGINMG ATCQEIKAAY RRLARVSHPD VVANSQKDTS ADEFIKIHAA YATLSDPEKR ADYDRTLFRR RRPVSSPFAM SASAATMGSS
201: PASVFSGRSS LRWETDQCW

Best Arabidopsis Sequence Match ( AT4G36040.1 )
(BLAST)

001: MLSSSPTSFT HPFLSSSPPL SPISPPSRTA RISPPLVSAS CSYTYTEDSP RLHQIPRRLT TVPASLYDVL EVPLGATSQD IKSAYRRLAR ICHPDVAGTD
101: RTSSSSADEF MKIHAAYCTL SDPEKRSVYD RRMLRRSRPL TVGTSGLGSY VGRNWETDQC W

Arabidopsis Description

ATJ11At4g36040 [Source:UniProtKB/TrEMBL;Acc:Q1H544]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.