Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G030600.8 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G40590.1 | HORVU3Hr1G030600.8 | AT5G58720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G469300.1 | Wheat | golgi | 93.84 | 98.56 |
| Zm00001d012992_P002 | Maize | mitochondrion, plasma membrane | 80.14 | 88.64 |
| TraesCS5B01G481800.1 | Wheat | nucleus | 88.36 | 82.69 |
| VIT_06s0004g07940.t01 | Wine grape | cytosol | 64.38 | 75.81 |
| HORVU3Hr1G081220.1 | Barley | cytosol | 55.48 | 75.7 |
| KRH17252 | Soybean | nucleus | 67.12 | 75.38 |
| KRH64187 | Soybean | nucleus | 66.44 | 75.19 |
| KRH72901 | Soybean | nucleus | 66.44 | 74.62 |
| KRH53763 | Soybean | nucleus | 65.75 | 74.42 |
| KRH57998 | Soybean | nucleus | 65.07 | 73.64 |
| OQU90753 | Sorghum | plastid | 78.77 | 73.25 |
| Solyc06g007470.2.1 | Tomato | nucleus | 63.7 | 73.23 |
| PGSC0003DMT400053000 | Potato | cytosol | 63.7 | 73.23 |
| CDY25697 | Canola | cytosol | 65.07 | 73.08 |
| KRH04512 | Soybean | nucleus | 64.38 | 72.87 |
| AT3G56340.1 | Thale cress | cytosol | 64.38 | 72.31 |
| Solyc04g008810.2.1 | Tomato | nucleus | 63.01 | 71.88 |
| PGSC0003DMT400065105 | Potato | cytosol | 63.01 | 71.88 |
| CDX72145 | Canola | cytosol | 65.75 | 71.64 |
| Bra007238.1-P | Field mustard | cytosol | 65.75 | 71.64 |
| CDX67642 | Canola | cytosol | 65.07 | 70.9 |
| CDY68398 | Canola | cytosol | 65.07 | 70.9 |
| AT2G40590.1 | Thale cress | cytosol | 63.01 | 70.23 |
| CDY27223 | Canola | cytosol, mitochondrion | 65.75 | 69.57 |
| AT2G40510.1 | Thale cress | cytosol | 63.01 | 69.17 |
| GSMUA_Achr3P17860_001 | Banana | mitochondrion | 64.38 | 68.61 |
| PGSC0003DMT400059492 | Potato | cytosol | 49.32 | 68.57 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 64.38 | 63.95 |
| VIT_13s0067g02700.t01 | Wine grape | plastid | 64.38 | 62.67 |
| Bra014697.1-P | Field mustard | cytosol | 65.07 | 62.09 |
| KRH06932 | Soybean | cytosol | 44.52 | 61.32 |
| GSMUA_Achr6P23430_001 | Banana | plastid | 65.75 | 61.15 |
| GSMUA_Achr6P15550_001 | Banana | cytosol | 56.85 | 61.03 |
| CDY24898 | Canola | cytosol, plastid | 65.07 | 57.58 |
| CDY07599 | Canola | plastid | 65.07 | 57.58 |
| CDY50450 | Canola | mitochondrion | 65.75 | 54.24 |
| CDY06976 | Canola | cytosol | 64.38 | 53.71 |
| CDX75988 | Canola | cytosol | 65.07 | 53.67 |
| PGSC0003DMT400062735 | Potato | cytosol | 36.99 | 51.43 |
| HORVU3Hr1G081210.2 | Barley | cytosol, nucleus | 42.47 | 45.59 |
| HORVU4Hr1G034100.2 | Barley | cytosol | 47.26 | 45.1 |
| Bra003237.1-P | Field mustard | cytosol, nucleus, peroxisome | 64.38 | 33.1 |
Protein Annotations
| MapMan:17.1.3.1.27 | Gene3D:3.30.1740.20 | UniProt:A0A287SR19 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:HORVU5Hr1G111820 |
| EnsemblPlants:HORVU5Hr1G111820.2 | InterPro:IPR038551 | PFAM:PF01283 | ScanProsite:PS00733 | PANTHER:PTHR12538 | PANTHER:PTHR12538:SF1 |
| InterPro:Ribosomal_S26e | InterPro:Ribosomal_S26e_sf | UniParc:UPI000B47F6B5 | SEG:seg | : | : |
Description
40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A287SR19]
Coordinates
chrchr5H:-:637279163..637281169
Molecular Weight (calculated)
15880.2 Da
IEP (calculated)
11.459
GRAVY (calculated)
-0.751
Length
146 amino acids
Sequence
(BLAST)
(BLAST)
001: CSQTFKRRNG GRNKHGRGHV KYIRCSNCAK CCPKDKAIKR FLVRNIVEQA AVRDVQEACV HDGYVLPKLY AKVHHCVSCA IHAHIVRVRS RENRRNREPP
101: QRFRRRDDGP RPGQGGPPRA GGPGGPGGAP AGAGAVPGAP APRALI
101: QRFRRRDDGP RPGQGGPPRA GGPGGPGGAP AGAGAVPGAP APRALI
001: MTFKRRNGGR NKHNRGHVNP IRCSNCGKCC PKDKAIKRFI VRNIVEQAAI RDVQEASVYE GYTLPKLYAK TQYCVSCAIH SHVVRVRSRT NRRVRTPPPR
101: FARRKEDTPK PGQPGQAPRP AGPGAAAAAA PRV
101: FARRKEDTPK PGQPGQAPRP AGPGAAAAAA PRV
Arabidopsis Description
RPS26B40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A178VTX1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.