Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G40590.1 | Thale cress | cytosol | 96.15 | 95.42 |
| AT2G40510.1 | Thale cress | cytosol | 96.92 | 94.74 |
| CDY25697 | Canola | cytosol | 93.85 | 93.85 |
| CDX67642 | Canola | cytosol | 95.38 | 92.54 |
| CDY68398 | Canola | cytosol | 95.38 | 92.54 |
| Bra007238.1-P | Field mustard | cytosol | 94.62 | 91.79 |
| CDX72145 | Canola | cytosol | 93.85 | 91.04 |
| CDY27223 | Canola | cytosol, mitochondrion | 94.62 | 89.13 |
| VIT_06s0004g07940.t01 | Wine grape | cytosol | 81.54 | 85.48 |
| KRH64187 | Soybean | nucleus | 82.31 | 82.95 |
| KRH53763 | Soybean | nucleus | 81.54 | 82.17 |
| Solyc06g007470.2.1 | Tomato | nucleus | 80.0 | 81.89 |
| PGSC0003DMT400053000 | Potato | cytosol | 80.0 | 81.89 |
| KRH17252 | Soybean | nucleus | 81.54 | 81.54 |
| KRH57998 | Soybean | nucleus | 80.77 | 81.4 |
| KRH04512 | Soybean | nucleus | 80.77 | 81.4 |
| KRH72901 | Soybean | nucleus | 80.77 | 80.77 |
| PGSC0003DMT400065105 | Potato | cytosol | 79.23 | 80.47 |
| Solyc04g008810.2.1 | Tomato | nucleus | 79.23 | 80.47 |
| Bra014697.1-P | Field mustard | cytosol | 93.08 | 79.08 |
| GSMUA_Achr3P17860_001 | Banana | mitochondrion | 77.69 | 73.72 |
| Zm00001d012992_P002 | Maize | mitochondrion, plasma membrane | 74.62 | 73.48 |
| PGSC0003DMT400059492 | Potato | cytosol | 59.23 | 73.33 |
| Os01t0823300-00 | Rice | nucleus | 73.85 | 72.18 |
| HORVU3Hr1G081220.1 | Barley | cytosol | 58.46 | 71.03 |
| VIT_13s0067g02700.t01 | Wine grape | plastid | 80.0 | 69.33 |
| CDX75988 | Canola | cytosol | 93.85 | 68.93 |
| CDY50450 | Canola | mitochondrion | 93.85 | 68.93 |
| EES19692 | Sorghum | cytosol, nucleus, plastid | 71.54 | 68.89 |
| KRH06932 | Soybean | cytosol | 56.15 | 68.87 |
| Os05t0477300-03 | Rice | nucleus, plastid | 71.54 | 68.38 |
| TraesCS5A01G469300.1 | Wheat | golgi | 71.54 | 66.91 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 73.85 | 65.31 |
| HORVU5Hr1G111820.2 | Barley | cytosol, nucleus | 72.31 | 64.38 |
| GSMUA_Achr6P23430_001 | Banana | plastid | 76.92 | 63.69 |
| Zm00001d010614_P007 | Maize | cytosol, mitochondrion, nucleus | 72.31 | 63.09 |
| OQU90753 | Sorghum | plastid | 74.62 | 61.78 |
| TraesCS5B01G481800.1 | Wheat | nucleus | 73.85 | 61.54 |
| TraesCS3D01G338700.1 | Wheat | cytosol | 66.15 | 60.56 |
| GSMUA_Achr6P15550_001 | Banana | cytosol | 63.08 | 60.29 |
| TraesCS3A01G344900.1 | Wheat | cytosol | 66.15 | 57.72 |
| PGSC0003DMT400062735 | Potato | cytosol | 44.62 | 55.24 |
| TraesCS3B01G377000.1 | Wheat | nucleus | 55.38 | 47.37 |
| HORVU3Hr1G081210.2 | Barley | cytosol, nucleus | 48.46 | 46.32 |
| Zm00001d034609_P001 | Maize | cytosol, nucleus, plasma membrane | 68.46 | 44.06 |
| Bra003237.1-P | Field mustard | cytosol, nucleus, peroxisome | 91.54 | 41.9 |
| TraesCS3D01G338900.1 | Wheat | cytosol, nucleus, plastid | 51.54 | 41.61 |
| TraesCS3D01G338800.1 | Wheat | cytosol, mitochondrion, nucleus | 50.77 | 40.99 |
| Os03t0816200-01 | Rice | cytosol | 21.54 | 39.44 |
| HORVU4Hr1G034100.2 | Barley | cytosol | 43.85 | 37.25 |
Protein Annotations
| MapMan:17.1.3.1.27 | Gene3D:3.30.1740.20 | EntrezGene:824801 | UniProt:A0A178VFW7 | ProteinID:AEE79511.1 | ArrayExpress:AT3G56340 |
| EnsemblPlantsGene:AT3G56340 | RefSeq:AT3G56340 | TAIR:AT3G56340 | RefSeq:AT3G56340-TAIR-G | EnsemblPlants:AT3G56340.1 | TAIR:AT3G56340.1 |
| EMBL:AY039886 | EMBL:AY133664 | ProteinID:CAB87433.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0019538 | GO:GO:0022626 |
| GO:GO:0022627 | GO:GO:0030529 | InterPro:IPR038551 | RefSeq:NP_191193.1 | ProteinID:OAP04756.1 | PFAM:PF01283 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| ScanProsite:PS00733 | PANTHER:PTHR12538 | PANTHER:PTHR12538:SF6 | UniProt:Q9LYK9 | InterPro:Ribosomal_S26e | InterPro:Ribosomal_S26e_sf |
| UniParc:UPI00000A8C0B | SEG:seg | : | : | : | : |
Description
RPS26C40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A178VFW7]
Coordinates
chr3:-:20892007..20893478
Molecular Weight (calculated)
14628.8 Da
IEP (calculated)
11.666
GRAVY (calculated)
-0.881
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MTFKRRNGGR NKHNRGHVKP IRCSNCGKCC PKDKAIKRFI VRNIVEQAAI RDVQEASVYE GYTLPKLYAK TQYCVSCAIH SHVVRVRSRT NRRVRTPPPR
101: FARRKEDTPK PAQPGQAPRP AGGAPAAPRA
101: FARRKEDTPK PAQPGQAPRP AGGAPAAPRA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.