CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25697	Canola	cytosol	71.19	96.92
CDX75988	Canola	cytosol	96.05	96.05
CDX72145	Canola	cytosol	72.32	95.52
AT3G56340.1	Thale cress	cytosol	68.93	93.85
CDY27223	Canola	cytosol, mitochondrion	72.88	93.48
CDX67642	Canola	cytosol	70.06	92.54
CDY68398	Canola	cytosol	70.06	92.54
VIT_06s0004g07940.t01	Wine grape	cytosol	60.45	86.29
Bra014697.1-P	Field mustard	cytosol	71.75	83.01
KRH64187	Soybean	nucleus	60.45	82.95
KRH17252	Soybean	nucleus	60.45	82.31
KRH57998	Soybean	nucleus	59.89	82.17
KRH53763	Soybean	nucleus	59.89	82.17
KRH04512	Soybean	nucleus	59.89	82.17
KRH72901	Soybean	nucleus	59.89	81.54
Solyc06g007470.2.1	Tomato	nucleus	58.19	81.1
PGSC0003DMT400053000	Potato	cytosol	58.19	81.1
Solyc04g008810.2.1	Tomato	nucleus	57.63	79.69
PGSC0003DMT400065105	Potato	cytosol	57.63	79.69
CDY07599	Canola	plastid	71.75	76.97
CDY24898	Canola	cytosol, plastid	70.62	75.76
GSMUA_Achr3P17860_001	Banana	mitochondrion	58.19	75.18
PGSC0003DMT400059492	Potato	cytosol	44.07	74.29
Zm00001d012992_P002	Maize	mitochondrion, plasma membrane	54.8	73.48
CDY06976	Canola	cytosol	71.19	72.0
Os01t0823300-00	Rice	nucleus	53.67	71.43
VIT_13s0067g02700.t01	Wine grape	plastid	59.89	70.67
KRH06932	Soybean	cytosol	41.81	69.81
HORVU3Hr1G081220.1	Barley	cytosol	41.81	69.16
EES19692	Sorghum	cytosol, nucleus, plastid	52.54	68.89
Os05t0477300-03	Rice	nucleus, plastid	52.54	68.38
TraesCS5A01G469300.1	Wheat	golgi	53.11	67.63
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	55.93	67.35
GSMUA_Achr6P23430_001	Banana	plastid	58.76	66.24
HORVU5Hr1G111820.2	Barley	cytosol, nucleus	54.24	65.75
Zm00001d010614_P007	Maize	cytosol, mitochondrion, nucleus	54.24	64.43
GSMUA_Achr6P15550_001	Banana	cytosol	49.15	63.97
OQU90753	Sorghum	plastid	56.5	63.69
TraesCS5B01G481800.1	Wheat	nucleus	54.8	62.18
TraesCS3D01G338700.1	Wheat	cytosol	46.33	57.75
PGSC0003DMT400062735	Potato	cytosol	33.33	56.19
TraesCS3A01G344900.1	Wheat	cytosol	46.89	55.7
TraesCS3B01G377000.1	Wheat	nucleus	40.68	47.37
HORVU3Hr1G081210.2	Barley	cytosol, nucleus	35.59	46.32
Zm00001d034609_P001	Maize	cytosol, nucleus, plasma membrane	50.85	44.55
TraesCS3D01G338900.1	Wheat	cytosol, nucleus, plastid	38.98	42.86
TraesCS3D01G338800.1	Wheat	cytosol, mitochondrion, nucleus	38.42	42.24
Os03t0816200-01	Rice	cytosol	16.38	40.85
HORVU4Hr1G034100.2	Barley	cytosol	33.9	39.22
CDX67643	Canola	cytosol	7.91	8.64

Protein Annotations

MapMan:17.1.3.1.27	Gene3D:3.30.1740.20	GO:A0A078IHK9	UniProt:A0A078IHK9	EnsemblPlants:CDY50450	ProteinID:CDY50450
ProteinID:CDY50450.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00096731001	InterPro:IPR038551
PFAM:PF01283	ScanProsite:PS00733	PANTHER:PTHR12538	PANTHER:PTHR12538:SF6	InterPro:Ribosomal_S26e	InterPro:Ribosomal_S26e_sf
UniParc:UPI0004EF34AB	SEG:seg	:	:	:	:

Description

BnaC04g24960D40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A078IHK9]

Coordinates

chrLK032912:+:19125..20610

Molecular Weight (calculated)

19775.1 Da

IEP (calculated)

11.512

GRAVY (calculated)

-0.624

Length

177 amino acids

Sequence
(BLAST)

001: MSIMGKENVA TRLSCVHGLR GHALVRRFYC GEHVSSTSAI NLGLWKLHTF KRRNGGRNKH NRGHVNPIRC SNCGKCCPKD KAIKRFLVRN IVEQAAIRDV
101: QEASVYDGYT LPKLYAKMQY CVSCAIHSHV VRVRSRTNRR VRTPPPRFAR RKEDAPKPGQ PGQAPRPAGG APAAPRA

Best Arabidopsis Sequence Match ( AT2G40510.1 )
(BLAST)

001: MTFKRRNGGR NKHNRGHVNP IRCSNCGKCC PKDKAIKRFI VRNIVEQAAI RDVQEASVYE GYTLPKLYAK TQYCVSCAIH SHVVRVRSRT NRRVRTPPPR
101: FARRKEDTPK PGQPGQAPRP AGPGAAAAAA PRV

Arabidopsis Description

RPS26B40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A178VTX1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.