Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G40590.1 | KRG98291 | AT5G58720.1 | 21798944 |
| AT2G40590.1 | KRH30312 | AT5G58720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH57998 | Soybean | nucleus | 77.36 | 63.57 |
| KRH04512 | Soybean | nucleus | 76.42 | 62.79 |
| KRH53763 | Soybean | nucleus | 75.47 | 62.02 |
| KRH72901 | Soybean | nucleus | 75.47 | 61.54 |
| KRH17252 | Soybean | nucleus | 75.47 | 61.54 |
| Solyc06g007470.2.1 | Tomato | nucleus | 73.58 | 61.42 |
| PGSC0003DMT400053000 | Potato | cytosol | 73.58 | 61.42 |
| VIT_06s0004g07940.t01 | Wine grape | cytosol | 71.7 | 61.29 |
| KRH64187 | Soybean | nucleus | 74.53 | 61.24 |
| Solyc04g008810.2.1 | Tomato | nucleus | 73.58 | 60.94 |
| PGSC0003DMT400065105 | Potato | cytosol | 73.58 | 60.94 |
| PGSC0003DMT400059492 | Potato | cytosol | 56.6 | 57.14 |
| AT3G56340.1 | Thale cress | cytosol | 68.87 | 56.15 |
| CDY25697 | Canola | cytosol | 68.87 | 56.15 |
| Bra007238.1-P | Field mustard | cytosol | 69.81 | 55.22 |
| AT2G40590.1 | Thale cress | cytosol | 67.92 | 54.96 |
| GSMUA_Achr3P17860_001 | Banana | mitochondrion | 70.75 | 54.74 |
| CDX72145 | Canola | cytosol | 68.87 | 54.48 |
| AT2G40510.1 | Thale cress | cytosol | 67.92 | 54.14 |
| CDY68398 | Canola | cytosol | 67.92 | 53.73 |
| CDX67642 | Canola | cytosol | 67.92 | 53.73 |
| CDY27223 | Canola | cytosol, mitochondrion | 69.81 | 53.62 |
| VIT_13s0067g02700.t01 | Wine grape | plastid | 74.53 | 52.67 |
| Zm00001d012992_P002 | Maize | mitochondrion, plasma membrane | 65.09 | 52.27 |
| HORVU3Hr1G081220.1 | Barley | cytosol | 51.89 | 51.4 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 69.81 | 50.34 |
| Os01t0823300-00 | Rice | nucleus | 62.26 | 49.62 |
| GSMUA_Achr6P23430_001 | Banana | plastid | 71.7 | 48.41 |
| Bra014697.1-P | Field mustard | cytosol | 69.81 | 48.37 |
| Os05t0477300-03 | Rice | nucleus, plastid | 60.38 | 47.06 |
| EES19692 | Sorghum | cytosol, nucleus, plastid | 59.43 | 46.67 |
| GSMUA_Achr6P15550_001 | Banana | cytosol | 59.43 | 46.32 |
| TraesCS5A01G469300.1 | Wheat | golgi | 60.38 | 46.04 |
| HORVU5Hr1G111820.2 | Barley | cytosol, nucleus | 61.32 | 44.52 |
| CDY07599 | Canola | plastid | 68.87 | 44.24 |
| CDY24898 | Canola | cytosol, plastid | 68.87 | 44.24 |
| OQU90753 | Sorghum | plastid | 65.09 | 43.95 |
| Zm00001d010614_P007 | Maize | cytosol, mitochondrion, nucleus | 60.38 | 42.95 |
| TraesCS5B01G481800.1 | Wheat | nucleus | 62.26 | 42.31 |
| CDX75988 | Canola | cytosol | 69.81 | 41.81 |
| CDY50450 | Canola | mitochondrion | 69.81 | 41.81 |
| CDY06976 | Canola | cytosol | 68.87 | 41.71 |
| TraesCS3D01G338700.1 | Wheat | cytosol | 55.66 | 41.55 |
| TraesCS3A01G344900.1 | Wheat | cytosol | 57.55 | 40.94 |
| PGSC0003DMT400062735 | Potato | cytosol | 38.68 | 39.05 |
| TraesCS3B01G377000.1 | Wheat | nucleus | 48.11 | 33.55 |
| HORVU3Hr1G081210.2 | Barley | cytosol, nucleus | 42.45 | 33.09 |
| Zm00001d034609_P001 | Maize | cytosol, nucleus, plasma membrane | 61.32 | 32.18 |
| HORVU4Hr1G034100.2 | Barley | cytosol | 42.45 | 29.41 |
| TraesCS3D01G338900.1 | Wheat | cytosol, nucleus, plastid | 42.45 | 27.95 |
| TraesCS3D01G338800.1 | Wheat | cytosol, mitochondrion, nucleus | 41.51 | 27.33 |
| Bra003237.1-P | Field mustard | cytosol, nucleus, peroxisome | 66.04 | 24.65 |
| Os03t0816200-01 | Rice | cytosol | 12.26 | 18.31 |
Protein Annotations
| MapMan:17.1.3.1.27 | Gene3D:3.30.1740.20 | UniProt:A0A0R0FYN8 | EMBL:ACUP02009899 | EnsemblPlantsGene:GLYMA_16G055600 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| GO:GO:0022627 | GO:GO:0030529 | InterPro:IPR038551 | EnsemblPlants:KRH06932 | ProteinID:KRH06932 | ProteinID:KRH06932.1 |
| PFAM:PF01283 | PANTHER:PTHR12538 | PANTHER:PTHR12538:SF6 | InterPro:Ribosomal_S26e | InterPro:Ribosomal_S26e_sf | UniParc:UPI0006ED9C19 |
Description
hypothetical protein
Coordinates
chr16:-:5447735..5449506
Molecular Weight (calculated)
11857.8 Da
IEP (calculated)
10.486
GRAVY (calculated)
-0.242
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: KFKRRNGGCN KHNRDHVKFI RCSNCGKCCP KDKAIKRFLV RNIVEQAAVR DVLEACNILF PKLYVKMQYC VSCDIHSMLG MMHKGPVSLV SGQAPRPAGI
101: GAPVRT
101: GAPVRT
001: MTFKRRNGGR NKHNRGHVKP IRCSNCGKCC PKDKAIKRFI VRNIVEQAAI RDVQEASVYE GYTLPKLYAK TQYCVSCAIH SHVVRVRSRT NRRVRTPPPR
101: FARRKEDTPK PAQPGQAPRP AGGAPAAPRA
101: FARRKEDTPK PAQPGQAPRP AGGAPAAPRA
Arabidopsis Description
RPS26C40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A178VFW7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.