CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
vacuole 1
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98291
KRH30312

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40590.1	KRG98291	AT5G58720.1	21798944
AT2G40590.1	KRH30312	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17252	Soybean	nucleus	98.46	98.46
KRH04512	Soybean	nucleus	96.92	97.67
KRH57998	Soybean	nucleus	96.92	97.67
KRH53763	Soybean	nucleus	95.38	96.12
KRH64187	Soybean	nucleus	94.62	95.35
VIT_06s0004g07940.t01	Wine grape	cytosol	86.15	90.32
PGSC0003DMT400053000	Potato	cytosol	84.62	86.61
Solyc06g007470.2.1	Tomato	nucleus	84.62	86.61
PGSC0003DMT400065105	Potato	cytosol	84.62	85.94
Solyc04g008810.2.1	Tomato	nucleus	84.62	85.94
AT2G40590.1	Thale cress	cytosol	81.54	80.92
CDY25697	Canola	cytosol	80.77	80.77
AT3G56340.1	Thale cress	cytosol	80.77	80.77
AT2G40510.1	Thale cress	cytosol	81.54	79.7
GSMUA_Achr3P17860_001	Banana	mitochondrion	83.85	79.56
CDX72145	Canola	cytosol	80.77	78.36
Bra007238.1-P	Field mustard	cytosol	80.77	78.36
PGSC0003DMT400059492	Potato	cytosol	63.08	78.1
CDY68398	Canola	cytosol	80.0	77.61
CDX67642	Canola	cytosol	80.0	77.61
VIT_13s0067g02700.t01	Wine grape	plastid	89.23	77.33
Zm00001d012992_P002	Maize	mitochondrion, plasma membrane	77.69	76.52
CDY27223	Canola	cytosol, mitochondrion	80.77	76.09
KRH06932	Soybean	cytosol	61.54	75.47
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	82.31	72.79
HORVU3Hr1G081220.1	Barley	cytosol	59.23	71.96
Os01t0823300-00	Rice	nucleus	73.08	71.43
GSMUA_Achr6P23430_001	Banana	plastid	85.38	70.7
TraesCS5A01G469300.1	Wheat	golgi	74.62	69.78
Os05t0477300-03	Rice	nucleus, plastid	72.31	69.12
EES19692	Sorghum	cytosol, nucleus, plastid	70.77	68.15
Bra014697.1-P	Field mustard	cytosol	80.0	67.97
GSMUA_Achr6P15550_001	Banana	cytosol	70.0	66.91
HORVU5Hr1G111820.2	Barley	cytosol, nucleus	74.62	66.44
CDY07599	Canola	plastid	82.31	64.85
CDY24898	Canola	cytosol, plastid	82.31	64.85
TraesCS5B01G481800.1	Wheat	nucleus	77.69	64.74
OQU90753	Sorghum	plastid	77.69	64.33
Zm00001d010614_P007	Maize	cytosol, mitochondrion, nucleus	71.54	62.42
PGSC0003DMT400062735	Potato	cytosol	50.0	61.9
CDY06976	Canola	cytosol	81.54	60.57
CDY50450	Canola	mitochondrion	81.54	59.89
CDX75988	Canola	cytosol	80.77	59.32
TraesCS3D01G338700.1	Wheat	cytosol	63.08	57.75
TraesCS3A01G344900.1	Wheat	cytosol	63.85	55.7
HORVU3Hr1G081210.2	Barley	cytosol, nucleus	50.0	47.79
TraesCS3B01G377000.1	Wheat	nucleus	53.85	46.05
Zm00001d034609_P001	Maize	cytosol, nucleus, plasma membrane	71.54	46.04
TraesCS3D01G338900.1	Wheat	cytosol, nucleus, plastid	53.85	43.48
TraesCS3D01G338800.1	Wheat	cytosol, mitochondrion, nucleus	53.08	42.86
Os03t0816200-01	Rice	cytosol	22.31	40.85
HORVU4Hr1G034100.2	Barley	cytosol	43.85	37.25
Bra003237.1-P	Field mustard	cytosol, nucleus, peroxisome	77.69	35.56

Protein Annotations

EntrezGene:100499862	MapMan:17.1.3.1.27	Gene3D:3.30.1740.20	EMBL:ACUP02001253	EMBL:BT089881	UniProt:C6SXI6
EnsemblPlantsGene:GLYMA_02G239700	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	InterPro:IPR038551	EnsemblPlants:KRH72901
ProteinID:KRH72901	ProteinID:KRH72901.1	PFAM:PF01283	ScanProsite:PS00733	PANTHER:PTHR12538	PANTHER:PTHR12538:SF6
InterPro:Ribosomal_S26e	InterPro:Ribosomal_S26e_sf	UniParc:UPI0001890CBA	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:42839384..42841491

Molecular Weight (calculated)

14930.2 Da

IEP (calculated)

11.489

GRAVY (calculated)

-0.886

Length

130 amino acids

Sequence
(BLAST)

001: MTFKRRNGGR NKHGRGHVKF IRCSNCGKCC PKDKAIKRFL VRNIVEQAAV RDVQEACVYE QYTLPKLYVK MQYCVSCAIH SHVVRVRSRT DRRKREPPQR
101: FIRRRDDAPR PGQPGGQGPR PAGTAAPVRT

Best Arabidopsis Sequence Match ( AT2G40510.1 )
(BLAST)

001: MTFKRRNGGR NKHNRGHVNP IRCSNCGKCC PKDKAIKRFI VRNIVEQAAI RDVQEASVYE GYTLPKLYAK TQYCVSCAIH SHVVRVRSRT NRRVRTPPPR
101: FARRKEDTPK PGQPGQAPRP AGPGAAAAAA PRV

Arabidopsis Description

RPS26B40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A178VTX1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.