Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- vacuole 1
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G40590.1 | KRG98291 | AT5G58720.1 | 21798944 |
| AT2G40590.1 | KRH30312 | AT5G58720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH57998 | Soybean | nucleus | 98.45 | 98.45 |
| KRH72901 | Soybean | nucleus | 97.67 | 96.92 |
| KRH17252 | Soybean | nucleus | 96.9 | 96.15 |
| KRH53763 | Soybean | nucleus | 95.35 | 95.35 |
| KRH64187 | Soybean | nucleus | 94.57 | 94.57 |
| VIT_06s0004g07940.t01 | Wine grape | cytosol | 87.6 | 91.13 |
| Solyc06g007470.2.1 | Tomato | nucleus | 84.5 | 85.83 |
| PGSC0003DMT400053000 | Potato | cytosol | 84.5 | 85.83 |
| Solyc04g008810.2.1 | Tomato | nucleus | 84.5 | 85.16 |
| PGSC0003DMT400065105 | Potato | cytosol | 84.5 | 85.16 |
| AT2G40590.1 | Thale cress | cytosol | 82.17 | 80.92 |
| AT3G56340.1 | Thale cress | cytosol | 81.4 | 80.77 |
| CDY25697 | Canola | cytosol | 80.62 | 80.0 |
| AT2G40510.1 | Thale cress | cytosol | 82.17 | 79.7 |
| Bra007238.1-P | Field mustard | cytosol | 81.4 | 78.36 |
| GSMUA_Achr3P17860_001 | Banana | mitochondrion | 82.95 | 78.1 |
| VIT_13s0067g02700.t01 | Wine grape | plastid | 90.7 | 78.0 |
| CDY68398 | Canola | cytosol | 80.62 | 77.61 |
| CDX67642 | Canola | cytosol | 80.62 | 77.61 |
| CDX72145 | Canola | cytosol | 80.62 | 77.61 |
| PGSC0003DMT400059492 | Potato | cytosol | 62.79 | 77.14 |
| KRH06932 | Soybean | cytosol | 62.79 | 76.42 |
| CDY27223 | Canola | cytosol, mitochondrion | 81.4 | 76.09 |
| Zm00001d012992_P002 | Maize | mitochondrion, plasma membrane | 75.97 | 74.24 |
| HORVU3Hr1G081220.1 | Barley | cytosol | 59.69 | 71.96 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 81.4 | 71.43 |
| Os01t0823300-00 | Rice | nucleus | 72.87 | 70.68 |
| GSMUA_Achr6P23430_001 | Banana | plastid | 83.72 | 68.79 |
| Os05t0477300-03 | Rice | nucleus, plastid | 72.09 | 68.38 |
| Bra014697.1-P | Field mustard | cytosol | 80.62 | 67.97 |
| TraesCS5A01G469300.1 | Wheat | golgi | 72.87 | 67.63 |
| EES19692 | Sorghum | cytosol, nucleus, plastid | 69.77 | 66.67 |
| GSMUA_Achr6P15550_001 | Banana | cytosol | 69.77 | 66.18 |
| CDY07599 | Canola | plastid | 82.95 | 64.85 |
| CDY24898 | Canola | cytosol, plastid | 82.95 | 64.85 |
| HORVU5Hr1G111820.2 | Barley | cytosol, nucleus | 72.87 | 64.38 |
| TraesCS5B01G481800.1 | Wheat | nucleus | 75.97 | 62.82 |
| OQU90753 | Sorghum | plastid | 75.97 | 62.42 |
| Zm00001d010614_P007 | Maize | cytosol, mitochondrion, nucleus | 72.09 | 62.42 |
| PGSC0003DMT400062735 | Potato | cytosol | 49.61 | 60.95 |
| CDY06976 | Canola | cytosol | 82.17 | 60.57 |
| CDY50450 | Canola | mitochondrion | 82.17 | 59.89 |
| CDX75988 | Canola | cytosol | 81.4 | 59.32 |
| TraesCS3D01G338700.1 | Wheat | cytosol | 63.57 | 57.75 |
| TraesCS3A01G344900.1 | Wheat | cytosol | 64.34 | 55.7 |
| HORVU3Hr1G081210.2 | Barley | cytosol, nucleus | 50.39 | 47.79 |
| TraesCS3B01G377000.1 | Wheat | nucleus | 54.26 | 46.05 |
| Zm00001d034609_P001 | Maize | cytosol, nucleus, plasma membrane | 71.32 | 45.54 |
| TraesCS3D01G338900.1 | Wheat | cytosol, nucleus, plastid | 52.71 | 42.24 |
| TraesCS3D01G338800.1 | Wheat | cytosol, mitochondrion, nucleus | 51.94 | 41.61 |
| Os03t0816200-01 | Rice | cytosol | 20.93 | 38.03 |
| HORVU4Hr1G034100.2 | Barley | cytosol | 43.41 | 36.6 |
| Bra003237.1-P | Field mustard | cytosol, nucleus, peroxisome | 78.29 | 35.56 |
Protein Annotations
| EntrezGene:100781822 | MapMan:17.1.3.1.27 | Gene3D:3.30.1740.20 | UniProt:A0A0R0FE22 | EMBL:ACUP02010434 | EnsemblPlantsGene:GLYMA_17G166400 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030529 | InterPro:IPR038551 | EnsemblPlants:KRH04512 | ProteinID:KRH04512 |
| ProteinID:KRH04512.1 | PFAM:PF01283 | ScanProsite:PS00733 | PANTHER:PTHR12538 | PANTHER:PTHR12538:SF6 | InterPro:Ribosomal_S26e |
| InterPro:Ribosomal_S26e_sf | UniParc:UPI0001890CBB | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr17:+:15201559..15203813
Molecular Weight (calculated)
14904.2 Da
IEP (calculated)
11.489
GRAVY (calculated)
-0.888
Length
129 amino acids
Sequence
(BLAST)
(BLAST)
001: MTFKRRNGGR NKHGRGHVKF IRCSNCGKCC PKDKAIKRFL VRNIVEQAAV RDVQEACVYE QYTLPKLYVK MQYCVSCAIH SHVVRVRSRT DRRKRDPPQR
101: FIRRRDDAQR PGQPGQAPRP AGTAAPVRT
101: FIRRRDDAQR PGQPGQAPRP AGTAAPVRT
001: MTFKRRNGGR NKHNRGHVNP IRCSNCGKCC PKDKAIKRFI VRNIVEQAAI RDVQEASVYE GYTLPKLYAK TQYCVSCAIH SHVVRVRSRT NRRVRTPPPR
101: FTRRKEDTPK PGQPGQAPRP AGPGAAAAPR V
101: FTRRKEDTPK PGQPGQAPRP AGPGAAAAPR V
Arabidopsis Description
RPS26A40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A178VPZ6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.