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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 1
  • cytosol 4
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 25464976
unclear: 26455813
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc06g007110.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G40590.1 Solyc06g007110.2.1 AT5G58720.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400053000 Potato cytosol 100.0 100.0
Solyc04g008810.2.1 Tomato nucleus 98.43 97.66
VIT_06s0004g07940.t01 Wine grape cytosol 85.04 87.1
KRH53763 Soybean nucleus 86.61 85.27
KRH57998 Soybean nucleus 86.61 85.27
KRH17252 Soybean nucleus 86.61 84.62
KRH72901 Soybean nucleus 86.61 84.62
KRH04512 Soybean nucleus 85.83 84.5
KRH64187 Soybean nucleus 85.83 84.5
PGSC0003DMT400059492 Potato cytosol 69.29 83.81
GSMUA_Achr3P17860_001 Banana mitochondrion 86.61 80.29
AT3G56340.1 Thale cress cytosol 81.89 80.0
CDY25697 Canola cytosol 80.31 78.46
AT2G40590.1 Thale cress cytosol 80.31 77.86
Bra007238.1-P Field mustard cytosol 81.1 76.87
AT2G40510.1 Thale cress cytosol 80.31 76.69
Zm00001d012992_P002 Maize mitochondrion, plasma membrane 79.53 76.52
CDX72145 Canola cytosol 80.31 76.12
CDX67642 Canola cytosol 79.53 75.37
CDY68398 Canola cytosol 79.53 75.37
CDY27223 Canola cytosol, mitochondrion 81.1 74.64
KRH06932 Soybean cytosol 61.42 73.58
GSMUA_Achr10P... Banana cytosol, nucleus, plastid 84.25 72.79
VIT_13s0067g02700.t01 Wine grape plastid 85.83 72.67
PGSC0003DMT400062735 Potato cytosol 59.84 72.38
GSMUA_Achr6P23430_001 Banana plastid 87.4 70.7
Os01t0823300-00 Rice nucleus 72.44 69.17
HORVU3Hr1G081220.1 Barley cytosol 58.27 69.16
GSMUA_Achr6P15550_001 Banana cytosol 72.44 67.65
Os05t0477300-03 Rice nucleus, plastid 71.65 66.91
TraesCS5A01G469300.1 Wheat golgi 73.23 66.91
EES19692 Sorghum cytosol, nucleus, plastid 70.87 66.67
Bra014697.1-P Field mustard cytosol 80.31 66.67
OQU90753 Sorghum plastid 79.53 64.33
HORVU5Hr1G111820.2 Barley cytosol, nucleus 73.23 63.7
TraesCS5B01G481800.1 Wheat nucleus 76.38 62.18
CDY07599 Canola plastid 80.31 61.82
CDY24898 Canola cytosol, plastid 80.31 61.82
Zm00001d010614_P007 Maize cytosol, mitochondrion, nucleus 70.08 59.73
TraesCS3D01G338700.1 Wheat cytosol 66.14 59.15
CDY50450 Canola mitochondrion 81.1 58.19
CDY06976 Canola cytosol 79.53 57.71
CDX75988 Canola cytosol 80.31 57.63
TraesCS3A01G344900.1 Wheat cytosol 66.14 56.38
HORVU3Hr1G081210.2 Barley cytosol, nucleus 50.39 47.06
TraesCS3B01G377000.1 Wheat nucleus 55.12 46.05
Zm00001d034609_P001 Maize cytosol, nucleus, plasma membrane 70.08 44.06
Os03t0816200-01 Rice cytosol 22.83 40.85
TraesCS3D01G338900.1 Wheat cytosol, nucleus, plastid 51.18 40.37
TraesCS3D01G338800.1 Wheat cytosol, mitochondrion, nucleus 51.18 40.37
HORVU4Hr1G034100.2 Barley cytosol 44.88 37.25
Bra003237.1-P Field mustard cytosol, nucleus, peroxisome 75.59 33.8
Protein Annotations
MapMan:17.1.3.1.27Gene3D:3.30.1740.20GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003729
GO:GO:0003735GO:GO:0005198GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005829GO:GO:0005840GO:GO:0006412GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0019538GO:GO:0022627GO:GO:0030529InterPro:IPR038551
UniProt:K4C3C9PFAM:PF01283ScanProsite:PS00733PANTHER:PTHR12538PANTHER:PTHR12538:SF6InterPro:Ribosomal_S26e
InterPro:Ribosomal_S26e_sfEnsemblPlantsGene:Solyc06g007470.2EnsemblPlants:Solyc06g007470.2.1UniParc:UPI000276611ASEG:seg:
Description
40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:K4C3C9]
Coordinates
chr6:-:1479427..1482088
Molecular Weight (calculated)
14574.9 Da
IEP (calculated)
11.518
GRAVY (calculated)
-0.794
Length
127 amino acids
Sequence
(BLAST)
001: MTFKRRNGGR NKHGRGHVKF IRCSNCGKCC PKDKAIKRFL VRNIVEQAAV RDVQEACAFE LYTLPKLYLK MQYCVSCAIH SKVVRVRSRT DRRVREPPQR
101: FRRPRDDLPK TGQAPRPAGG PPAAPRT
Best Arabidopsis Sequence Match ( AT3G56340.1 )
(BLAST)
001: MTFKRRNGGR NKHNRGHVKP IRCSNCGKCC PKDKAIKRFI VRNIVEQAAI RDVQEASVYE GYTLPKLYAK TQYCVSCAIH SHVVRVRSRT NRRVRTPPPR
101: FARRKEDTPK PAQPGQAPRP AGGAPAAPRA
Arabidopsis Description
RPS26C40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A178VFW7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.