Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 1
- peroxisome 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G56340.1 | Thale cress | cytosol | 41.9 | 91.54 |
| CDX67642 | Canola | cytosol | 42.96 | 91.04 |
| CDY68398 | Canola | cytosol | 42.96 | 91.04 |
| Bra007238.1-P | Field mustard | cytosol | 41.2 | 87.31 |
| VIT_06s0004g07940.t01 | Wine grape | cytosol | 35.92 | 82.26 |
| KRH64187 | Soybean | nucleus | 36.97 | 81.4 |
| KRH53763 | Soybean | nucleus | 36.62 | 80.62 |
| KRH17252 | Soybean | nucleus | 35.92 | 78.46 |
| KRH57998 | Soybean | nucleus | 35.56 | 78.29 |
| KRH04512 | Soybean | nucleus | 35.56 | 78.29 |
| Bra014697.1-P | Field mustard | cytosol | 41.9 | 77.78 |
| KRH72901 | Soybean | nucleus | 35.56 | 77.69 |
| Solyc04g008810.2.1 | Tomato | nucleus | 34.15 | 75.78 |
| PGSC0003DMT400065105 | Potato | cytosol | 34.15 | 75.78 |
| Solyc06g007470.2.1 | Tomato | nucleus | 33.8 | 75.59 |
| PGSC0003DMT400053000 | Potato | cytosol | 33.8 | 75.59 |
| PGSC0003DMT400059492 | Potato | cytosol | 26.76 | 72.38 |
| Os01t0823300-00 | Rice | nucleus | 33.45 | 71.43 |
| Zm00001d012992_P002 | Maize | mitochondrion, plasma membrane | 33.1 | 71.21 |
| GSMUA_Achr3P17860_001 | Banana | mitochondrion | 33.8 | 70.07 |
| Os05t0477300-03 | Rice | nucleus, plastid | 32.75 | 68.38 |
| HORVU3Hr1G081220.1 | Barley | cytosol | 25.7 | 68.22 |
| EES19692 | Sorghum | cytosol, nucleus, plastid | 32.39 | 68.15 |
| VIT_13s0067g02700.t01 | Wine grape | plastid | 35.92 | 68.0 |
| TraesCS5A01G469300.1 | Wheat | golgi | 32.39 | 66.19 |
| KRH06932 | Soybean | cytosol | 24.65 | 66.04 |
| HORVU5Hr1G111820.2 | Barley | cytosol, nucleus | 33.1 | 64.38 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 33.1 | 63.95 |
| Zm00001d010614_P007 | Maize | cytosol, mitochondrion, nucleus | 33.45 | 63.76 |
| GSMUA_Achr6P23430_001 | Banana | plastid | 34.51 | 62.42 |
| OQU90753 | Sorghum | plastid | 33.8 | 61.15 |
| TraesCS5B01G481800.1 | Wheat | nucleus | 33.45 | 60.9 |
| GSMUA_Achr6P15550_001 | Banana | cytosol | 28.87 | 60.29 |
| TraesCS3D01G338700.1 | Wheat | cytosol | 28.17 | 56.34 |
| TraesCS3A01G344900.1 | Wheat | cytosol | 28.17 | 53.69 |
| PGSC0003DMT400062735 | Potato | cytosol | 19.01 | 51.43 |
| TraesCS3B01G377000.1 | Wheat | nucleus | 24.65 | 46.05 |
| HORVU3Hr1G081210.2 | Barley | cytosol, nucleus | 21.83 | 45.59 |
| Zm00001d034609_P001 | Maize | cytosol, nucleus, plasma membrane | 30.99 | 43.56 |
| Os03t0816200-01 | Rice | cytosol | 10.56 | 42.25 |
| TraesCS3D01G338900.1 | Wheat | cytosol, nucleus, plastid | 23.59 | 41.61 |
| TraesCS3D01G338800.1 | Wheat | cytosol, mitochondrion, nucleus | 23.24 | 40.99 |
| HORVU4Hr1G034100.2 | Barley | cytosol | 20.77 | 38.56 |
Protein Annotations
| MapMan:15.5.17 | MapMan:17.1.3.1.27 | Gene3D:3.30.1740.20 | EnsemblPlantsGene:Bra003237 | EnsemblPlants:Bra003237.1 | EnsemblPlants:Bra003237.1-P |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005840 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR003441 | InterPro:IPR036093 | InterPro:IPR038551 |
| UniProt:M4CGA4 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF01283 | PFAM:PF02365 | ScanProsite:PS00733 |
| PFscan:PS51005 | PANTHER:PTHR12538 | PANTHER:PTHR12538:SF6 | InterPro:Ribosomal_S26e | InterPro:Ribosomal_S26e_sf | SUPFAM:SSF101941 |
| UniParc:UPI00025414CA | SEG:seg | : | : | : | : |
Description
AT3G56340 (E=3e-033) | 40S ribosomal protein S26 (RPS26C)
Coordinates
chrA07:-:12072054..12076175
Molecular Weight (calculated)
31908.1 Da
IEP (calculated)
10.175
GRAVY (calculated)
-0.611
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQAPPPANV VESITSFQLH RNLNLPPGYG FHASDAQLLQ LFLGPFVDER ELKTCPIHNI TGDVYSSSPD VLTGAYEHDG EDKWFFFCTN KYDDDVTSRA
101: GRVIVGGGGE WVKMGPSKKL FANNTLLGFK RTQDFYVQGM DLSYWRMEEL SLRAKTFKRR NGGRNKHNRG HVKPIRCSNC GKCCPKDKAI KRFIVRNIVE
201: QAAIRDVQEA SVYDGYTLPK LYAKTQYCVS CAIHSHVVRV RSRTNRRVRT PPPRFVRRKE DAPKPGQPGQ APRPAGGAPA AARA
101: GRVIVGGGGE WVKMGPSKKL FANNTLLGFK RTQDFYVQGM DLSYWRMEEL SLRAKTFKRR NGGRNKHNRG HVKPIRCSNC GKCCPKDKAI KRFIVRNIVE
201: QAAIRDVQEA SVYDGYTLPK LYAKTQYCVS CAIHSHVVRV RSRTNRRVRT PPPRFVRRKE DAPKPGQPGQ APRPAGGAPA AARA
001: MTFKRRNGGR NKHNRGHVKP IRCSNCGKCC PKDKAIKRFI VRNIVEQAAI RDVQEASVYE GYTLPKLYAK TQYCVSCAIH SHVVRVRSRT NRRVRTPPPR
101: FARRKEDTPK PAQPGQAPRP AGGAPAAPRA
101: FARRKEDTPK PAQPGQAPRP AGGAPAAPRA
Arabidopsis Description
RPS26C40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A178VFW7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.