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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 2
  • vacuole 1
  • cytosol 2
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid, vacuole
BaCelLo:nucleus
EpiLoc:vacuole
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG98291
KRH30312

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH04512 Soybean nucleus 98.45 98.45
KRH72901 Soybean nucleus 97.67 96.92
KRH53763 Soybean nucleus 96.9 96.9
KRH17252 Soybean nucleus 96.9 96.15
KRH64187 Soybean nucleus 96.12 96.12
VIT_06s0004g07940.t01 Wine grape cytosol 86.05 89.52
Solyc06g007470.2.1 Tomato nucleus 85.27 86.61
PGSC0003DMT400053000 Potato cytosol 85.27 86.61
Solyc04g008810.2.1 Tomato nucleus 85.27 85.94
PGSC0003DMT400065105 Potato cytosol 85.27 85.94
AT3G56340.1 Thale cress cytosol 81.4 80.77
AT2G40590.1 Thale cress cytosol 81.4 80.15
CDY25697 Canola cytosol 80.62 80.0
AT2G40510.1 Thale cress cytosol 81.4 78.95
GSMUA_Achr3P17860_001 Banana mitochondrion 83.72 78.83
Bra007238.1-P Field mustard cytosol 81.4 78.36
PGSC0003DMT400059492 Potato cytosol 63.57 78.1
CDX72145 Canola cytosol 80.62 77.61
CDY68398 Canola cytosol 80.62 77.61
CDX67642 Canola cytosol 80.62 77.61
KRH06932 Soybean cytosol 63.57 77.36
VIT_13s0067g02700.t01 Wine grape plastid 89.15 76.67
CDY27223 Canola cytosol, mitochondrion 81.4 76.09
Zm00001d012992_P002 Maize mitochondrion, plasma membrane 76.74 75.0
GSMUA_Achr10P... Banana cytosol, nucleus, plastid 82.17 72.11
HORVU3Hr1G081220.1 Barley cytosol 59.69 71.96
Os01t0823300-00 Rice nucleus 72.87 70.68
GSMUA_Achr6P23430_001 Banana plastid 85.27 70.06
Os05t0477300-03 Rice nucleus, plastid 72.09 68.38
TraesCS5A01G469300.1 Wheat golgi 73.64 68.35
Bra014697.1-P Field mustard cytosol 80.62 67.97
GSMUA_Achr6P15550_001 Banana cytosol 70.54 66.91
EES19692 Sorghum cytosol, nucleus, plastid 69.77 66.67
HORVU5Hr1G111820.2 Barley cytosol, nucleus 73.64 65.07
CDY24898 Canola cytosol, plastid 82.17 64.24
CDY07599 Canola plastid 82.17 64.24
TraesCS5B01G481800.1 Wheat nucleus 76.74 63.46
OQU90753 Sorghum plastid 76.74 63.06
Zm00001d010614_P007 Maize cytosol, mitochondrion, nucleus 72.09 62.42
PGSC0003DMT400062735 Potato cytosol 50.39 61.9
CDY06976 Canola cytosol 81.4 60.0
CDY50450 Canola mitochondrion 82.17 59.89
CDX75988 Canola cytosol 81.4 59.32
TraesCS3D01G338700.1 Wheat cytosol 63.57 57.75
TraesCS3A01G344900.1 Wheat cytosol 65.12 56.38
HORVU3Hr1G081210.2 Barley cytosol, nucleus 50.39 47.79
TraesCS3B01G377000.1 Wheat nucleus 55.04 46.71
Zm00001d034609_P001 Maize cytosol, nucleus, plasma membrane 72.09 46.04
TraesCS3D01G338900.1 Wheat cytosol, nucleus, plastid 51.94 41.61
TraesCS3D01G338800.1 Wheat cytosol, mitochondrion, nucleus 51.16 40.99
Os03t0816200-01 Rice cytosol 21.71 39.44
HORVU4Hr1G034100.2 Barley cytosol 44.19 37.25
Bra003237.1-P Field mustard cytosol, nucleus, peroxisome 78.29 35.56
Protein Annotations
EntrezGene:100808790MapMan:17.1.3.1.27Gene3D:3.30.1740.20UniProt:A0A0R4J3A8EMBL:ACUP02003184EnsemblPlantsGene:GLYMA_05G099500
GO:GO:0003674GO:GO:0003735GO:GO:0005198GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005840GO:GO:0006412GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987GO:GO:0019538GO:GO:0030529InterPro:IPR038551EnsemblPlants:KRH57998ProteinID:KRH57998
ProteinID:KRH57998.1PFAM:PF01283ScanProsite:PS00733PANTHER:PTHR12538PANTHER:PTHR12538:SF6InterPro:Ribosomal_S26e
InterPro:Ribosomal_S26e_sfUniParc:UPI0001890CBCSEG:seg:::
Description
hypothetical protein
Coordinates
chr5:-:26363125..26365148
Molecular Weight (calculated)
14904.2 Da
IEP (calculated)
11.489
GRAVY (calculated)
-0.905
Length
129 amino acids
Sequence
(BLAST)
001: MTFKRRNGGR NKHGRGHVKF IRCSNCGKCC PKDKAIKRFL VRNIVEQAAV RDVQEACVYE QYTLPKLYVK MQYCVSCAIH SHVVRVRSRT DRRKREPPQR
101: FIRRRDDAQR PGQPGQAPRP AGTGAPVRT
Best Arabidopsis Sequence Match ( AT2G40590.1 )
(BLAST)
001: MTFKRRNGGR NKHNRGHVNP IRCSNCGKCC PKDKAIKRFI VRNIVEQAAI RDVQEASVYE GYTLPKLYAK TQYCVSCAIH SHVVRVRSRT NRRVRTPPPR
101: FTRRKEDTPK PGQPGQAPRP AGPGAAAAPR V
Arabidopsis Description
RPS26A40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A178VPZ6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.